Click here to switch to the map view.

The map label for this gene is ywbF [H]

Identifier: 16125728

GI number: 16125728

Start: 1635170

End: 1636384

Strand: Direct

Name: ywbF [H]

Synonym: CC_1481

Alternate gene names: 16125728

Gene position: 1635170-1636384 (Clockwise)

Preceding gene: 16125727

Following gene: 16125731

Centisome position: 40.71

GC content: 68.64

Gene sequence:

>1215_bases
GTGGCGGGCGGCGCGGACAGGACGGAGGGGCAGGGGCTTTCGACCCTGGTTCGCCTGTGCCTGTTCTACGCCGCCATCTT
CCTGAGCTCGGGCGTCAGCCTGCCGTATATCGGCACCTATCTGCGCGATCGCGGGATGAGCGGCGGCGAGATTGGCCTCA
TCCTGGCCATACCCCTGCTGCTCAAGCCCTTCACGGGACCGGTGCTGGCGGTCTGGGCGGACGGTTTCACCCTGCGCCGC
ACGCCCATGGTGCTGCTGCTGCTGGGCGCGGCGATCGGTTATGGCGCTCTGCTGGGTCCGGCGAACCTCTGGTGGTTCAT
TCTGGCGTGGTTTGTCGGCCAGACCTTGCTGTCGACCGTTTCACCGTTGATCGACGTCATCACCCTGCGTCGGGCGCGGG
TCGAGAACTTCAACTACGGGATTCCGCGCGGCACGGGTTCCAGCGCCTTCATCGCGGCCAATCTCGCCATGGGGGCGATC
CTCACCGTCGCGGCGCCGACCATCATCGCCGTCTGGATCGCGGCGGCCTGTCTGTTCGGGGCGGTGGCCGCTGCGACCCT
GGTGCCGCCCGAGCGCGTCCACGCCGAGGGGGCCAAGCCGCTGAAGTCCGAGCGCTGGAACGGCCTGTCGGAGCTGCTGC
GTAACCGCACCTTCGTGCTGGCGGTGGTGACCGCCGGCCTGATCCAGGGTGCGCACGCCTTCTACTACAGCTTCTCGGCT
ATCCTCTGGCGCAAGCAGGGGATCAGCGAGCCGATGATCGGCGTGCTGTGGGGCGTAGGCGTCGCAGCCGAGGTGGCCTT
CATGTGGTTCCTGGAGCCTCTACGCCGACGCTGGGGACCGGAGTTGTTCCTGGTGCTGGGCGCGGGCGCCGCTGTGCTGC
GGTGGACGATCTACGCCTTCGAGCCGCCGCTTTGGGCGCTGTTTCCGCTCCAGATGCTGCATGCCTTGACCTTCGCCGCC
TCGTTCCTGGCGTCGTTGCGGCTGATCGAAAAGCTGGCCCCGCCGTCCGCCGCCTCGCCGGCCCAGGCGATCAACTCGGC
GCTGTCGTCGGGGTTCACCTTGGGCATCGCCACCCTGGCGTCGGGCCCGTTGTTCGACGCCTTCGGGGCGTTTGGCTATC
TGGCCACCGCCGGTATGGCGCTGCTGGGCCTGGCCGGCGCGATCCTGCTGACGCGCAGGGCGCGGAGCCTGTCGTCCGAC
AGGCTCCGGTACTGA

Upstream 100 bases:

>100_bases
AGCGTCGGCCGGCCGATCACCGTGCCCGAGGTCCTGTTCAAGAAGATCGAGGACGAGCAGATCGCCGAATGGACAGCCCG
CTTCGGCGGCGCGGAGTAAG

Downstream 100 bases:

>100_bases
CCCGGCGCCGCGCTTAGATGGTGTAGTCGATCTCCTGGCCCTCCAGCCAGGCGACGATCCGTTCGGCCGCCTCGACAGGA
TCGATCGCGGTGGTGTCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MAGGADRTEGQGLSTLVRLCLFYAAIFLSSGVSLPYIGTYLRDRGMSGGEIGLILAIPLLLKPFTGPVLAVWADGFTLRR
TPMVLLLLGAAIGYGALLGPANLWWFILAWFVGQTLLSTVSPLIDVITLRRARVENFNYGIPRGTGSSAFIAANLAMGAI
LTVAAPTIIAVWIAAACLFGAVAAATLVPPERVHAEGAKPLKSERWNGLSELLRNRTFVLAVVTAGLIQGAHAFYYSFSA
ILWRKQGISEPMIGVLWGVGVAAEVAFMWFLEPLRRRWGPELFLVLGAGAAVLRWTIYAFEPPLWALFPLQMLHALTFAA
SFLASLRLIEKLAPPSAASPAQAINSALSSGFTLGIATLASGPLFDAFGAFGYLATAGMALLGLAGAILLTRRARSLSSD
RLRY

Sequences:

>Translated_404_residues
MAGGADRTEGQGLSTLVRLCLFYAAIFLSSGVSLPYIGTYLRDRGMSGGEIGLILAIPLLLKPFTGPVLAVWADGFTLRR
TPMVLLLLGAAIGYGALLGPANLWWFILAWFVGQTLLSTVSPLIDVITLRRARVENFNYGIPRGTGSSAFIAANLAMGAI
LTVAAPTIIAVWIAAACLFGAVAAATLVPPERVHAEGAKPLKSERWNGLSELLRNRTFVLAVVTAGLIQGAHAFYYSFSA
ILWRKQGISEPMIGVLWGVGVAAEVAFMWFLEPLRRRWGPELFLVLGAGAAVLRWTIYAFEPPLWALFPLQMLHALTFAA
SFLASLRLIEKLAPPSAASPAQAINSALSSGFTLGIATLASGPLFDAFGAFGYLATAGMALLGLAGAILLTRRARSLSSD
RLRY
>Mature_403_residues
AGGADRTEGQGLSTLVRLCLFYAAIFLSSGVSLPYIGTYLRDRGMSGGEIGLILAIPLLLKPFTGPVLAVWADGFTLRRT
PMVLLLLGAAIGYGALLGPANLWWFILAWFVGQTLLSTVSPLIDVITLRRARVENFNYGIPRGTGSSAFIAANLAMGAIL
TVAAPTIIAVWIAAACLFGAVAAATLVPPERVHAEGAKPLKSERWNGLSELLRNRTFVLAVVTAGLIQGAHAFYYSFSAI
LWRKQGISEPMIGVLWGVGVAAEVAFMWFLEPLRRRWGPELFLVLGAGAAVLRWTIYAFEPPLWALFPLQMLHALTFAAS
FLASLRLIEKLAPPSAASPAQAINSALSSGFTLGIATLASGPLFDAFGAFGYLATAGMALLGLAGAILLTRRARSLSSDR
LRY

Specific function: Probable Permease Involved In The Uptake Of 3- Phenylpropionic Acid. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lacY/rafB permease family. HcaT subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788886, Length=356, Percent_Identity=29.7752808988764, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43024; Mature: 42893

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGGADRTEGQGLSTLVRLCLFYAAIFLSSGVSLPYIGTYLRDRGMSGGEIGLILAIPLL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
LKPFTGPVLAVWADGFTLRRTPMVLLLLGAAIGYGALLGPANLWWFILAWFVGQTLLSTV
HCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
SPLIDVITLRRARVENFNYGIPRGTGSSAFIAANLAMGAILTVAAPTIIAVWIAAACLFG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAAATLVPPERVHAEGAKPLKSERWNGLSELLRNRTFVLAVVTAGLIQGAHAFYYSFSA
HHHHHHCCCHHHHHCCCCCCCHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ILWRKQGISEPMIGVLWGVGVAAEVAFMWFLEPLRRRWGPELFLVLGAGAAVLRWTIYAF
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC
EPPLWALFPLQMLHALTFAASFLASLRLIEKLAPPSAASPAQAINSALSSGFTLGIATLA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHC
SGPLFDAFGAFGYLATAGMALLGLAGAILLTRRARSLSSDRLRY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AGGADRTEGQGLSTLVRLCLFYAAIFLSSGVSLPYIGTYLRDRGMSGGEIGLILAIPLL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
LKPFTGPVLAVWADGFTLRRTPMVLLLLGAAIGYGALLGPANLWWFILAWFVGQTLLSTV
HCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
SPLIDVITLRRARVENFNYGIPRGTGSSAFIAANLAMGAILTVAAPTIIAVWIAAACLFG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAAATLVPPERVHAEGAKPLKSERWNGLSELLRNRTFVLAVVTAGLIQGAHAFYYSFSA
HHHHHHCCCHHHHHCCCCCCCHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ILWRKQGISEPMIGVLWGVGVAAEVAFMWFLEPLRRRWGPELFLVLGAGAAVLRWTIYAF
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC
EPPLWALFPLQMLHALTFAASFLASLRLIEKLAPPSAASPAQAINSALSSGFTLGIATLA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHC
SGPLFDAFGAFGYLATAGMALLGLAGAILLTRRARSLSSDRLRY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]