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The map label for this gene is cspD [C]

Identifier: 16125636

GI number: 16125636

Start: 1539663

End: 1539857

Strand: Direct

Name: cspD [C]

Synonym: CC_1387

Alternate gene names: 16125636

Gene position: 1539663-1539857 (Clockwise)

Preceding gene: 16125635

Following gene: 16125637

Centisome position: 38.33

GC content: 64.1

Gene sequence:

>195_bases
GTGAAATGGTTCAACCGCACCAAGGGCTATGGCTTCGTGATCCGTGACGCAGAGCCAGGCGATATCTTCGTGCATATCGA
GACGCTGCGCCGAGGCGGGCTTGAGGATCTGCAGCCGGGCGACGACGTCCTGGTGCGGTTCGCACGCGGGCCCAAGGGAC
TGGTTGTCGCCGAGATTTCCGCCGGCGACGCCTGA

Upstream 100 bases:

>100_bases
GCGGCGGACCTTCGCCGAAGGCCCCGTTCGACGCGACGGCTTGCGTGACGGTCACGGGCGCAGCGCTCTGACGCCGGAAG
GACCCGCCGAGCACGCCAAG

Downstream 100 bases:

>100_bases
CTTTCGCCACTGGCCGCAGGAGGCTAGTCTCGCAAGAGACTGGCTTTCCGTGAGGCGATGCGTGACCGAAGTGATGATCC
ACAGGCGAGCCCTCTTGGCT

Product: cold-shock domain-contain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 64; Mature: 64

Protein sequence:

>64_residues
MKWFNRTKGYGFVIRDAEPGDIFVHIETLRRGGLEDLQPGDDVLVRFARGPKGLVVAEISAGDA

Sequences:

>Translated_64_residues
MKWFNRTKGYGFVIRDAEPGDIFVHIETLRRGGLEDLQPGDDVLVRFARGPKGLVVAEISAGDA
>Mature_64_residues
MKWFNRTKGYGFVIRDAEPGDIFVHIETLRRGGLEDLQPGDDVLVRFARGPKGLVVAEISAGDA

Specific function: Inhibits DNA Replication At Both Initiation And Elongation Steps, Most Probably By Binding To The Opened, Single- Stranded Regions At Replication Forks. Plays A Regulatory Role In Chromosomal Replication In Nutrient-Depleted Cells. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7058; Mature: 7058

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWFNRTKGYGFVIRDAEPGDIFVHIETLRRGGLEDLQPGDDVLVRFARGPKGLVVAEIS
CCCCCCCCCCEEEEEECCCCEEEEEEEHHCCCCCCCCCCCCHHEEEECCCCCCEEEEEEC
AGDA
CCCC
>Mature Secondary Structure
MKWFNRTKGYGFVIRDAEPGDIFVHIETLRRGGLEDLQPGDDVLVRFARGPKGLVVAEIS
CCCCCCCCCCEEEEEECCCCEEEEEEEHHCCCCCCCCCCCCHHEEEECCCCCCEEEEEEC
AGDA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA