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The map label for this gene is xynB [H]

Identifier: 16125476

GI number: 16125476

Start: 1384792

End: 1385628

Strand: Direct

Name: xynB [H]

Synonym: CC_1226

Alternate gene names: 16125476

Gene position: 1384792-1385628 (Clockwise)

Preceding gene: 16125475

Following gene: 16125478

Centisome position: 34.47

GC content: 67.74

Gene sequence:

>837_bases
GTGAGGGCGCTCCTCCTGATCGCCGCTCTGCTGGCCCCGACGGCGGCGTTGGCGCAGCAGCAGCTCCCGCTATGGCCCAA
CGGCGCGCCGGGTTTCGAGAGCCGCAAGGCGATCCCGGAGCAGGCGGCCGACTACTGGGTCAAGAGCGTCAACAACCCGT
CCATCACCGCCTATCTGCCGCCCAAGGAGACCGCCACCGGCGCGGCCCTGATCGTGCTTCCGGGCGGCGGACATCGGATC
CTGGTCATCCACTCCGAGGGTTCGGACGTGGCCAAGGTGATGAACCCCAAGGGCGTGGCGGTCTTCGTGGTGAAGTACCG
GCTCTTCCGGGAAGAAGGCTCGCCCTATACGATCGATCACGCCCGCCAGGATGCGGTCCGCGCCGTCCGCTATGTCCGCG
CGCACGCCGCCGTGTTCGGCGTCGATCCGAAGCGGATCGGTCTCATGGGCTTCTCAGCCGGCGGCGAAGCGGTGAACCTC
GCTGTCTATCAGGGCGCGGCGAACGATCCGAAGACGGACGCCGTCGATGCGGTCAGCGCGCGTCCCGATTTCCAGGTGCT
GGTCTATCCCGGACCACTGGGCGTGCCTGAAAAGGTCCCCACCGACACGCCGCCGGCCTTCATCGTGGCGGCCAACGACG
ACGAATGCTGCTCGGCGCCGCCGGTCGACCTGCTGACCAGGTTCCGGGCCGCCAAGGTTCCGATCGAGTTCCACCTGTTC
CAGTCCGGCGGGCATGCCTTCAACATGGGCTTGCGCAGCCACAAGGCCGCGCTCAAGGCGTGGCCGGATCGGCTTTTCGA
CTGGCTGGCGGATAACGGTTGGCTGAAGGCGGGCTAG

Upstream 100 bases:

>100_bases
CCGGCCGCGAGCCGATCGTCGGCGGGGACGATGGCCTCAAGGACCTCCGAGTGATCGAAGCGATCTACCGCGCGGCGCGA
GAAGGGCGGACGGTCAAGCT

Downstream 100 bases:

>100_bases
CTGACCAGCGCCGCTTCGGTGGCGCGGACCAGGCCGTCAATGACGCCGGGCTCCGTGGAGGCGTGGCCCGCGTCCCAGAT
GATCTCGAAGCGCGCCTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MRALLLIAALLAPTAALAQQQLPLWPNGAPGFESRKAIPEQAADYWVKSVNNPSITAYLPPKETATGAALIVLPGGGHRI
LVIHSEGSDVAKVMNPKGVAVFVVKYRLFREEGSPYTIDHARQDAVRAVRYVRAHAAVFGVDPKRIGLMGFSAGGEAVNL
AVYQGAANDPKTDAVDAVSARPDFQVLVYPGPLGVPEKVPTDTPPAFIVAANDDECCSAPPVDLLTRFRAAKVPIEFHLF
QSGGHAFNMGLRSHKAALKAWPDRLFDWLADNGWLKAG

Sequences:

>Translated_278_residues
MRALLLIAALLAPTAALAQQQLPLWPNGAPGFESRKAIPEQAADYWVKSVNNPSITAYLPPKETATGAALIVLPGGGHRI
LVIHSEGSDVAKVMNPKGVAVFVVKYRLFREEGSPYTIDHARQDAVRAVRYVRAHAAVFGVDPKRIGLMGFSAGGEAVNL
AVYQGAANDPKTDAVDAVSARPDFQVLVYPGPLGVPEKVPTDTPPAFIVAANDDECCSAPPVDLLTRFRAAKVPIEFHLF
QSGGHAFNMGLRSHKAALKAWPDRLFDWLADNGWLKAG
>Mature_278_residues
MRALLLIAALLAPTAALAQQQLPLWPNGAPGFESRKAIPEQAADYWVKSVNNPSITAYLPPKETATGAALIVLPGGGHRI
LVIHSEGSDVAKVMNPKGVAVFVVKYRLFREEGSPYTIDHARQDAVRAVRYVRAHAAVFGVDPKRIGLMGFSAGGEAVNL
AVYQGAANDPKTDAVDAVSARPDFQVLVYPGPLGVPEKVPTDTPPAFIVAANDDECCSAPPVDLLTRFRAAKVPIEFHLF
QSGGHAFNMGLRSHKAALKAWPDRLFDWLADNGWLKAG

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 29790; Mature: 29790

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALLLIAALLAPTAALAQQQLPLWPNGAPGFESRKAIPEQAADYWVKSVNNPSITAYLP
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCEEEEEEC
PKETATGAALIVLPGGGHRILVIHSEGSDVAKVMNPKGVAVFVVKYRLFREEGSPYTIDH
CCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHCCCCCEEEEEEEEEHHHHCCCCEEECH
ARQDAVRAVRYVRAHAAVFGVDPKRIGLMGFSAGGEAVNLAVYQGAANDPKTDAVDAVSA
HHHHHHHHHHHHHHHHHEEECCHHHEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHCC
RPDFQVLVYPGPLGVPEKVPTDTPPAFIVAANDDECCSAPPVDLLTRFRAAKVPIEFHLF
CCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
QSGGHAFNMGLRSHKAALKAWPDRLFDWLADNGWLKAG
ECCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure
MRALLLIAALLAPTAALAQQQLPLWPNGAPGFESRKAIPEQAADYWVKSVNNPSITAYLP
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCEEEEEEC
PKETATGAALIVLPGGGHRILVIHSEGSDVAKVMNPKGVAVFVVKYRLFREEGSPYTIDH
CCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHCCCCCEEEEEEEEEHHHHCCCCEEECH
ARQDAVRAVRYVRAHAAVFGVDPKRIGLMGFSAGGEAVNLAVYQGAANDPKTDAVDAVSA
HHHHHHHHHHHHHHHHHEEECCHHHEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHCC
RPDFQVLVYPGPLGVPEKVPTDTPPAFIVAANDDECCSAPPVDLLTRFRAAKVPIEFHLF
CCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
QSGGHAFNMGLRSHKAALKAWPDRLFDWLADNGWLKAG
ECCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]