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The map label for this gene is xerD [C]

Identifier: 13488150

GI number: 13488150

Start: 289760

End: 290776

Strand: Reverse

Name: xerD [C]

Synonym: mll9329

Alternate gene names: 13488150

Gene position: 290776-289760 (Counterclockwise)

Preceding gene: 13488151

Following gene: 13488149

Centisome position: 82.63

GC content: 59.1

Gene sequence:

>1017_bases
ATGAACACCGCCACGCCCAAAGCGCTCTTTGCCCTCGTGGAGTCATTTTTCATCAGCTATCTGCCACGGCAGCGTGGTGC
AAGCCCGCATACGACACGTGCTTACCGCGACACGCTGAAGCTTCTATTCCAGTTTGTCGCCCAGCGCCGCGGACGGGAGA
TCGCCGATCTCGTGCTGGAGGACCTGAACGCCGATACGATTGCCGGTTTCCTCGACCATCTTGAAAGCGAAAGATCCAAC
TCTGCCGCCACGCGCAATTGCCGGCGCGCTGCCCTGCGCAGCTTTTTCAAGCACCTTCTTCGCAATGACCTGGACAACGC
TCTCCGTTATACACGGGTGCTGGCGCTGCCGGCGAAGCGGATGAAGCAGAAGCCGGTGACCTACCTCGAAGCAGTTGATG
TGCGAGCGATTATCGGCAACCCCGATCGCAGGACGCACGATGGTTGGCGCGATCACACGCTATTGCTCTTTCTCTATAAT
TCAGCAGCGCGAGTGAGTGAAGCGACCGGACTGTTGTGGCGTGATTTGCAGTTGACACCGCCGCGCCAGGTTCGGTTAAG
AGGGAAAGGGCGCAAGGAGCGGCTTGTTCCAATATGGCGCGAGACGGCGGACGCGCTGGGCCGGCTACGAAAGCTATCAG
GTGGCGCGGACCACGAGCATGTTTTCGTCAACCGCCACAACCAGCCTCTGACCCGCGACGGTGTAGCATATATCCTGGCC
AAACATGCTGCGTCGGTCGCCCGCGGGCGGCCAAGGCTGGCACGTGACCGCATTACGCCACACGTTCTTCGACACAGCGC
GGCCGTCGCCCTGCTGCAGTCGGGCACAGATGTGACTGTCATACGCGATTATCTCGGCCATTCGAGCATTGCCACCACCA
ACCGTTATATCTCAACGAACCTGAAGATGAGACGCGATGCGCTCGAAACGTTCTGGAAACATGCGGGCATCGAAGCGACC
CACGACAAGCCGTGGAAACCGAAGCCGGATCTGCTCTCTTTTCTCCAGTCACTTTGA

Upstream 100 bases:

>100_bases
ACATCCTTGGCACCGAGGTTTATCTGAAGGCGACCCCGCAACTGCTGGAGCTGGCAAGCACCCGGTTCGAGCAACATGTA
CGAAGCGCGAGGCAGCCTCG

Downstream 100 bases:

>100_bases
CTTTATCTGGAGATGTGGCCCGGTCTTTTCCGGCAATTGACGACGTTCACGAACAGCTACCCCAGATAAAACCGGGCGTG
AGATAATGAGCATTGGACGA

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MNTATPKALFALVESFFISYLPRQRGASPHTTRAYRDTLKLLFQFVAQRRGREIADLVLEDLNADTIAGFLDHLESERSN
SAATRNCRRAALRSFFKHLLRNDLDNALRYTRVLALPAKRMKQKPVTYLEAVDVRAIIGNPDRRTHDGWRDHTLLLFLYN
SAARVSEATGLLWRDLQLTPPRQVRLRGKGRKERLVPIWRETADALGRLRKLSGGADHEHVFVNRHNQPLTRDGVAYILA
KHAASVARGRPRLARDRITPHVLRHSAAVALLQSGTDVTVIRDYLGHSSIATTNRYISTNLKMRRDALETFWKHAGIEAT
HDKPWKPKPDLLSFLQSL

Sequences:

>Translated_338_residues
MNTATPKALFALVESFFISYLPRQRGASPHTTRAYRDTLKLLFQFVAQRRGREIADLVLEDLNADTIAGFLDHLESERSN
SAATRNCRRAALRSFFKHLLRNDLDNALRYTRVLALPAKRMKQKPVTYLEAVDVRAIIGNPDRRTHDGWRDHTLLLFLYN
SAARVSEATGLLWRDLQLTPPRQVRLRGKGRKERLVPIWRETADALGRLRKLSGGADHEHVFVNRHNQPLTRDGVAYILA
KHAASVARGRPRLARDRITPHVLRHSAAVALLQSGTDVTVIRDYLGHSSIATTNRYISTNLKMRRDALETFWKHAGIEAT
HDKPWKPKPDLLSFLQSL
>Mature_338_residues
MNTATPKALFALVESFFISYLPRQRGASPHTTRAYRDTLKLLFQFVAQRRGREIADLVLEDLNADTIAGFLDHLESERSN
SAATRNCRRAALRSFFKHLLRNDLDNALRYTRVLALPAKRMKQKPVTYLEAVDVRAIIGNPDRRTHDGWRDHTLLLFLYN
SAARVSEATGLLWRDLQLTPPRQVRLRGKGRKERLVPIWRETADALGRLRKLSGGADHEHVFVNRHNQPLTRDGVAYILA
KHAASVARGRPRLARDRITPHVLRHSAAVALLQSGTDVTVIRDYLGHSSIATTNRYISTNLKMRRDALETFWKHAGIEAT
HDKPWKPKPDLLSFLQSL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=293, Percent_Identity=31.0580204778157, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1790244, Length=294, Percent_Identity=26.8707482993197, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38536; Mature: 38536

Theoretical pI: Translated: 11.35; Mature: 11.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTATPKALFALVESFFISYLPRQRGASPHTTRAYRDTLKLLFQFVAQRRGREIADLVLE
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
DLNADTIAGFLDHLESERSNSAATRNCRRAALRSFFKHLLRNDLDNALRYTRVLALPAKR
HCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
MKQKPVTYLEAVDVRAIIGNPDRRTHDGWRDHTLLLFLYNSAARVSEATGLLWRDLQLTP
HHCCCHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCC
PRQVRLRGKGRKERLVPIWRETADALGRLRKLSGGADHEHVFVNRHNQPLTRDGVAYILA
CHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHH
KHAASVARGRPRLARDRITPHVLRHSAAVALLQSGTDVTVIRDYLGHSSIATTNRYISTN
HHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCHHHHCC
LKMRRDALETFWKHAGIEATHDKPWKPKPDLLSFLQSL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHC
>Mature Secondary Structure
MNTATPKALFALVESFFISYLPRQRGASPHTTRAYRDTLKLLFQFVAQRRGREIADLVLE
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
DLNADTIAGFLDHLESERSNSAATRNCRRAALRSFFKHLLRNDLDNALRYTRVLALPAKR
HCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
MKQKPVTYLEAVDVRAIIGNPDRRTHDGWRDHTLLLFLYNSAARVSEATGLLWRDLQLTP
HHCCCHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCC
PRQVRLRGKGRKERLVPIWRETADALGRLRKLSGGADHEHVFVNRHNQPLTRDGVAYILA
CHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHH
KHAASVARGRPRLARDRITPHVLRHSAAVALLQSGTDVTVIRDYLGHSSIATTNRYISTN
HHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCHHHHCC
LKMRRDALETFWKHAGIEATHDKPWKPKPDLLSFLQSL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]