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The map label for this gene is xerD [C]

Identifier: 13488149

GI number: 13488149

Start: 288612

End: 289511

Strand: Reverse

Name: xerD [C]

Synonym: mll9328

Alternate gene names: 13488149

Gene position: 289511-288612 (Counterclockwise)

Preceding gene: 13488150

Following gene: 13488148

Centisome position: 82.27

GC content: 60.33

Gene sequence:

>900_bases
ATGCCAAGGAGCCCTTTAATGACCCCGCTTCGGTTACGCATGATAAACGACATGCAGGTCCGCAATCTGTCGCCGCATAC
GCAGGACTCGTATCTGCTGCAAGTTTCGCAGTTTGCCCGCCATTTTGCGAAGTCGCCCGCCTTGCTCTGTCAGGAAGATG
TCCGCACCTACCAAGTCTATCTGACGAATGAGAAGAAGCTGGCGCCGAAGTCCATACACGTGGCCGTTTCGGCGCTCCGT
TTTTTGTACCGCGTCACGCTCGGCTTTGAATGGGATTTCGACCGCATCATTCCGTGCCCCAGGGTGCCCAAGACACTCGC
CGTCATCCTCAGCCCCGAAGAGGTATTACACTTTCTCGGCTGCGTGGAGAGCCTGAAGCATCAGACGATCCTGACGACAT
GCTACGCCGCCGGGCTGCGGATTTCCGAAGCGGTGCACCTGAGACCGGAGGCCATCGACCGACAACGAATGGTACTGCGC
GTCGATCAAGGCAAGGGGCAGAAGGACCGTTACGTCATGCTCTCGGCGCGCTTGCTGGAGACGCTGACCGACTATTGGCG
TGCCGTCCGGCCGAAGACGTGGATGTTTCCCGGCACCATCCCCAACGAACCGATATCGACCAATGCGGTGCAGAACGCCT
GCGGCAAGGCGCACCGGCTGTCGGGCCTGGGCAAGCCCGTGACGCCGCATTCGTTGCGGCACGCCTTTGCCTGCCACCTA
CTTGAGGCCGGCACCGATATCCGTACCATCCAGCTTTTGCTCGGCCATCGCAGCCTGTCGACCACCTCGCAATATCTGCG
GATCGCAACCAGCAAGGTCTGCGCGGCGACGAGTCCGCTGGAGTTGTTGCCACGGCCAGTCCCGAAGGCGGCACCACCGC
TACCACCTGAACATTTCTGA

Upstream 100 bases:

>100_bases
GCGAGGCATCCTGGCATGATGGGCCGGACGTAATCGGCCGGGTTCATAGGGGCTTGCTTCAGGCAAGGTGACGCTGCTGC
CCACGCGCAGCGTCACCTCA

Downstream 100 bases:

>100_bases
CGGTCGCCCCATGGGGCATCTGGTCCGGAGGTGGCGGATGTATTCCGCCGCTATGGTGCTGCTTGGCGTGAGCAGCACGG
CGCCTCGCTGTCGACCGAAC

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MPRSPLMTPLRLRMINDMQVRNLSPHTQDSYLLQVSQFARHFAKSPALLCQEDVRTYQVYLTNEKKLAPKSIHVAVSALR
FLYRVTLGFEWDFDRIIPCPRVPKTLAVILSPEEVLHFLGCVESLKHQTILTTCYAAGLRISEAVHLRPEAIDRQRMVLR
VDQGKGQKDRYVMLSARLLETLTDYWRAVRPKTWMFPGTIPNEPISTNAVQNACGKAHRLSGLGKPVTPHSLRHAFACHL
LEAGTDIRTIQLLLGHRSLSTTSQYLRIATSKVCAATSPLELLPRPVPKAAPPLPPEHF

Sequences:

>Translated_299_residues
MPRSPLMTPLRLRMINDMQVRNLSPHTQDSYLLQVSQFARHFAKSPALLCQEDVRTYQVYLTNEKKLAPKSIHVAVSALR
FLYRVTLGFEWDFDRIIPCPRVPKTLAVILSPEEVLHFLGCVESLKHQTILTTCYAAGLRISEAVHLRPEAIDRQRMVLR
VDQGKGQKDRYVMLSARLLETLTDYWRAVRPKTWMFPGTIPNEPISTNAVQNACGKAHRLSGLGKPVTPHSLRHAFACHL
LEAGTDIRTIQLLLGHRSLSTTSQYLRIATSKVCAATSPLELLPRPVPKAAPPLPPEHF
>Mature_298_residues
PRSPLMTPLRLRMINDMQVRNLSPHTQDSYLLQVSQFARHFAKSPALLCQEDVRTYQVYLTNEKKLAPKSIHVAVSALRF
LYRVTLGFEWDFDRIIPCPRVPKTLAVILSPEEVLHFLGCVESLKHQTILTTCYAAGLRISEAVHLRPEAIDRQRMVLRV
DQGKGQKDRYVMLSARLLETLTDYWRAVRPKTWMFPGTIPNEPISTNAVQNACGKAHRLSGLGKPVTPHSLRHAFACHLL
EAGTDIRTIQLLLGHRSLSTTSQYLRIATSKVCAATSPLELLPRPVPKAAPPLPPEHF

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=273, Percent_Identity=30.7692307692308, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1790244, Length=268, Percent_Identity=28.3582089552239, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33763; Mature: 33632

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRSPLMTPLRLRMINDMQVRNLSPHTQDSYLLQVSQFARHFAKSPALLCQEDVRTYQVY
CCCCCCCCHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEE
LTNEKKLAPKSIHVAVSALRFLYRVTLGFEWDFDRIIPCPRVPKTLAVILSPEEVLHFLG
EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHEEEECHHHHHHHHH
CVESLKHQTILTTCYAAGLRISEAVHLRPEAIDRQRMVLRVDQGKGQKDRYVMLSARLLE
HHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCEEEEEECCCCCCCCCEEHHHHHHHH
TLTDYWRAVRPKTWMFPGTIPNEPISTNAVQNACGKAHRLSGLGKPVTPHSLRHAFACHL
HHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LEAGTDIRTIQLLLGHRSLSTTSQYLRIATSKVCAATSPLELLPRPVPKAAPPLPPEHF
HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRSPLMTPLRLRMINDMQVRNLSPHTQDSYLLQVSQFARHFAKSPALLCQEDVRTYQVY
CCCCCCCHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEE
LTNEKKLAPKSIHVAVSALRFLYRVTLGFEWDFDRIIPCPRVPKTLAVILSPEEVLHFLG
EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHEEEECHHHHHHHHH
CVESLKHQTILTTCYAAGLRISEAVHLRPEAIDRQRMVLRVDQGKGQKDRYVMLSARLLE
HHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCEEEEEECCCCCCCCCEEHHHHHHHH
TLTDYWRAVRPKTWMFPGTIPNEPISTNAVQNACGKAHRLSGLGKPVTPHSLRHAFACHL
HHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LEAGTDIRTIQLLLGHRSLSTTSQYLRIATSKVCAATSPLELLPRPVPKAAPPLPPEHF
HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]