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The map label for this gene is ddpC [H]

Identifier: 13488081

GI number: 13488081

Start: 113467

End: 114357

Strand: Reverse

Name: ddpC [H]

Synonym: mll9134

Alternate gene names: 13488081

Gene position: 114357-113467 (Counterclockwise)

Preceding gene: 13488082

Following gene: 13488080

Centisome position: 32.5

GC content: 61.5

Gene sequence:

>891_bases
ATGATGGCCGAGCTCGAAACCCTGGCACCTGAATCCTTGCGCCTCTCCAACGCCTATCAGAACTGGTATCGCTTCTCGCG
CAATCCGACGGCGGTGATCGGGGCGGCGATCGTTATCCTCACGATTCTCGCGGCCATTTTCGCACCCTACATCACGCCGC
ATCCCGAACATGTCGGCGCCGCCGTCAATTTCCGCGCGCGGCACCTGCCGCCTTCCGCAGAATATTGGTTCGGCAGCGAC
AATGTCGGCCGCGACATCTTCACCCGGGTGATTTTCGGCGCCCGCATCTCGCTGCTGCTGGCACTGGTGGTGCTCGGCAC
CGCCGTACCGTTTGGTACCGGGCTTGGCTTGCTGGCCGGCTATTTCGGCGGCTGGGTCGAGGCCGTGATCATGCGGTTGA
CAGACATCGCGCTTGCCATCCCGCCGCTGGTCATGGCGTTGGCCGTTGCCGCAGTACTGTCGCCTGATCTCATCAACTCA
ATGCTGGCGATCGCCGGTCTCTGGTGGACTTGGCACACCCGGCTGATCTATTCGATCGCACGGCAATTGCGCAGCCAGGA
ATTTGTCGAAGCGGCGGAAACGCTGGGTGCCTCGAAATTCCACATTCTCTTCCGCGAAATCCTGCCGAACTGCGTCTCGG
CGCTCGCGGTCAAGACCTCACTCGATTGCGGCTTCGTCATCCTTGTTGGCGCATCGCTCTCCTTCCTCGGTCTTGGCATC
CAGCCGCCGACGCCCGATCTCGGTACCATGGTGTCCCAGGGCTCAGCCTTCCTGCCGGATTACTGGTGGGAATCGGTGTT
GCCCGGCTTCGCCATCCTGTTCATAGCCCTCGGCTTCAACCTGCTTGGCGATGGCCTGCGCGACCTCTTCGATGTTCAGG
AGGTCAAATGA

Upstream 100 bases:

>100_bases
GCGTGGTGGTCGTCTCTGGCGTGTTCTTCGTGCTCGTCAATCTCGTCATCGACGTGCTGGTCGGCTTCGTCGATCCCCGC
GTCCGCATCAGGGGGCATCG

Downstream 100 bases:

>100_bases
GCGGGGCTTTGCTTTCCGTCCGGGATATCTCCGTCGAGTTCACGACCTATGGCCGTACGAATCGGGTGCTCAACAACGTC
TCGCTCGACGTGCCGGCCCA

Product: peptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MMAELETLAPESLRLSNAYQNWYRFSRNPTAVIGAAIVILTILAAIFAPYITPHPEHVGAAVNFRARHLPPSAEYWFGSD
NVGRDIFTRVIFGARISLLLALVVLGTAVPFGTGLGLLAGYFGGWVEAVIMRLTDIALAIPPLVMALAVAAVLSPDLINS
MLAIAGLWWTWHTRLIYSIARQLRSQEFVEAAETLGASKFHILFREILPNCVSALAVKTSLDCGFVILVGASLSFLGLGI
QPPTPDLGTMVSQGSAFLPDYWWESVLPGFAILFIALGFNLLGDGLRDLFDVQEVK

Sequences:

>Translated_296_residues
MMAELETLAPESLRLSNAYQNWYRFSRNPTAVIGAAIVILTILAAIFAPYITPHPEHVGAAVNFRARHLPPSAEYWFGSD
NVGRDIFTRVIFGARISLLLALVVLGTAVPFGTGLGLLAGYFGGWVEAVIMRLTDIALAIPPLVMALAVAAVLSPDLINS
MLAIAGLWWTWHTRLIYSIARQLRSQEFVEAAETLGASKFHILFREILPNCVSALAVKTSLDCGFVILVGASLSFLGLGI
QPPTPDLGTMVSQGSAFLPDYWWESVLPGFAILFIALGFNLLGDGLRDLFDVQEVK
>Mature_296_residues
MMAELETLAPESLRLSNAYQNWYRFSRNPTAVIGAAIVILTILAAIFAPYITPHPEHVGAAVNFRARHLPPSAEYWFGSD
NVGRDIFTRVIFGARISLLLALVVLGTAVPFGTGLGLLAGYFGGWVEAVIMRLTDIALAIPPLVMALAVAAVLSPDLINS
MLAIAGLWWTWHTRLIYSIARQLRSQEFVEAAETLGASKFHILFREILPNCVSALAVKTSLDCGFVILVGASLSFLGLGI
QPPTPDLGTMVSQGSAFLPDYWWESVLPGFAILFIALGFNLLGDGLRDLFDVQEVK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=293, Percent_Identity=43.6860068259386, Blast_Score=231, Evalue=4e-62,
Organism=Escherichia coli, GI1787054, Length=284, Percent_Identity=40.4929577464789, Blast_Score=198, Evalue=4e-52,
Organism=Escherichia coli, GI1789964, Length=277, Percent_Identity=40.4332129963899, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1789889, Length=231, Percent_Identity=33.3333333333333, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1787549, Length=293, Percent_Identity=33.1058020477816, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787498, Length=273, Percent_Identity=31.8681318681319, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788505, Length=250, Percent_Identity=31.6, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32129; Mature: 32129

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAELETLAPESLRLSNAYQNWYRFSRNPTAVIGAAIVILTILAAIFAPYITPHPEHVGA
CCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCH
AVNFRARHLPPSAEYWFGSDNVGRDIFTRVIFGARISLLLALVVLGTAVPFGTGLGLLAG
HHCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
YFGGWVEAVIMRLTDIALAIPPLVMALAVAAVLSPDLINSMLAIAGLWWTWHTRLIYSIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
RQLRSQEFVEAAETLGASKFHILFREILPNCVSALAVKTSLDCGFVILVGASLSFLGLGI
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHCCCC
QPPTPDLGTMVSQGSAFLPDYWWESVLPGFAILFIALGFNLLGDGLRDLFDVQEVK
CCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMAELETLAPESLRLSNAYQNWYRFSRNPTAVIGAAIVILTILAAIFAPYITPHPEHVGA
CCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCH
AVNFRARHLPPSAEYWFGSDNVGRDIFTRVIFGARISLLLALVVLGTAVPFGTGLGLLAG
HHCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
YFGGWVEAVIMRLTDIALAIPPLVMALAVAAVLSPDLINSMLAIAGLWWTWHTRLIYSIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
RQLRSQEFVEAAETLGASKFHILFREILPNCVSALAVKTSLDCGFVILVGASLSFLGLGI
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHCCCC
QPPTPDLGTMVSQGSAFLPDYWWESVLPGFAILFIALGFNLLGDGLRDLFDVQEVK
CCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]