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The map label for this gene is ddpB [H]

Identifier: 13488082

GI number: 13488082

Start: 114354

End: 115367

Strand: Reverse

Name: ddpB [H]

Synonym: mll9135

Alternate gene names: 13488082

Gene position: 115367-114354 (Counterclockwise)

Preceding gene: 13488083

Following gene: 13488081

Centisome position: 32.78

GC content: 62.82

Gene sequence:

>1014_bases
GTGCTTTTCCTCGTCCGGCGAGTACTGTGGTCGATCCTCGTCCTCGTGGGCCTGTCGATCGTAATCTTCGGCATCGCCCG
CGGCATGCCGGGCGACCCGGCCCGGCTGGCGCTCGGGCCGCGAGCGACGCAGGAGCAGGTTAATGGGCTCTCCCACAGCC
TCGGCCTGGACCGACCGCTCTACGAGCAATATGGCATGTTCGTCTCCGGCCTTGCCAAGGGCGATCTCGGCCTGTCGCTG
CTCACCAAGCGGCCGGTTAACGACGACATCCGCGACACATTCGCGGCAACCTTCGAACTGGTGCTGGCGACCATCAGCCT
CGCCTTCGTGCTCGGTGTGCCGCTCGGCGTCATGGCCGCCCGCTGGAAGGACAAATGGCCGGATAATCTCGTGCGGCTGA
TCGCTATCGTCTCGGCTGTGACACCAAGCTTCTTCCTCGCGCTTCTCTTACAGATTCTGGCCGGCTATGTGCTGCACATC
CTGCCGACCACCGGGCGACTGCCGCCGACCATGACCTTTTCGGCCGATATAACCGGCCTGATGACGATAGACTCCCTTCT
CCATGGTCGACTGGACGTTTTTGGCGAGGCATGGCGCTACCTGCTGCTGCCGTCGATCGCGCTTTCCGCCGCGACCATGG
GCCAGATCGCCCGCATTACCCGCGCCTCGATGATCGATGTCTCGAGCCAGGACTATATCGAGGCAGCCCGCGCCTTCGGC
ATTCCAGAGCGGCTCAGGGTATTCAAATACATGCTGCGGCCCAGCTTCGTGCCGCCGCTCACCATATCCGGGCTGGAATT
CGCGTCCTTGATCGGCAATGCCTTCGTGATCGAACTGGTGTTTGCCTGGCCGGGCATGGCGGCCTATGGCGTGCGCACGA
TCATGCAGAAGGATCTCAACGCCGTTATGGGCGTGGTGGTCGTCTCTGGCGTGTTCTTCGTGCTCGTCAATCTCGTCATC
GACGTGCTGGTCGGCTTCGTCGATCCCCGCGTCCGCATCAGGGGGCATCGATGA

Upstream 100 bases:

>100_bases
GGACCTCGAGACGCTGACTGGCGATCCGCCATCGACGGCTGCTCCCGGCGCAAACGCTGTTGTCCCATTCGCTCAGAGAA
GGCTTCTTTAGTTGGAATTC

Downstream 100 bases:

>100_bases
TGGCCGAGCTCGAAACCCTGGCACCTGAATCCTTGCGCCTCTCCAACGCCTATCAGAACTGGTATCGCTTCTCGCGCAAT
CCGACGGCGGTGATCGGGGC

Product: peptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MLFLVRRVLWSILVLVGLSIVIFGIARGMPGDPARLALGPRATQEQVNGLSHSLGLDRPLYEQYGMFVSGLAKGDLGLSL
LTKRPVNDDIRDTFAATFELVLATISLAFVLGVPLGVMAARWKDKWPDNLVRLIAIVSAVTPSFFLALLLQILAGYVLHI
LPTTGRLPPTMTFSADITGLMTIDSLLHGRLDVFGEAWRYLLLPSIALSAATMGQIARITRASMIDVSSQDYIEAARAFG
IPERLRVFKYMLRPSFVPPLTISGLEFASLIGNAFVIELVFAWPGMAAYGVRTIMQKDLNAVMGVVVVSGVFFVLVNLVI
DVLVGFVDPRVRIRGHR

Sequences:

>Translated_337_residues
MLFLVRRVLWSILVLVGLSIVIFGIARGMPGDPARLALGPRATQEQVNGLSHSLGLDRPLYEQYGMFVSGLAKGDLGLSL
LTKRPVNDDIRDTFAATFELVLATISLAFVLGVPLGVMAARWKDKWPDNLVRLIAIVSAVTPSFFLALLLQILAGYVLHI
LPTTGRLPPTMTFSADITGLMTIDSLLHGRLDVFGEAWRYLLLPSIALSAATMGQIARITRASMIDVSSQDYIEAARAFG
IPERLRVFKYMLRPSFVPPLTISGLEFASLIGNAFVIELVFAWPGMAAYGVRTIMQKDLNAVMGVVVVSGVFFVLVNLVI
DVLVGFVDPRVRIRGHR
>Mature_337_residues
MLFLVRRVLWSILVLVGLSIVIFGIARGMPGDPARLALGPRATQEQVNGLSHSLGLDRPLYEQYGMFVSGLAKGDLGLSL
LTKRPVNDDIRDTFAATFELVLATISLAFVLGVPLGVMAARWKDKWPDNLVRLIAIVSAVTPSFFLALLLQILAGYVLHI
LPTTGRLPPTMTFSADITGLMTIDSLLHGRLDVFGEAWRYLLLPSIALSAATMGQIARITRASMIDVSSQDYIEAARAFG
IPERLRVFKYMLRPSFVPPLTISGLEFASLIGNAFVIELVFAWPGMAAYGVRTIMQKDLNAVMGVVVVSGVFFVLVNLVI
DVLVGFVDPRVRIRGHR

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=41.6413373860182, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI1787053, Length=332, Percent_Identity=34.0361445783133, Blast_Score=211, Evalue=7e-56,
Organism=Escherichia coli, GI1789965, Length=334, Percent_Identity=32.0359281437126, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1789888, Length=334, Percent_Identity=33.2335329341317, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=31.1355311355311, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1787497, Length=333, Percent_Identity=32.1321321321321, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1788504, Length=299, Percent_Identity=23.4113712374582, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36835; Mature: 36835

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFLVRRVLWSILVLVGLSIVIFGIARGMPGDPARLALGPRATQEQVNGLSHSLGLDRPL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCHH
YEQYGMFVSGLAKGDLGLSLLTKRPVNDDIRDTFAATFELVLATISLAFVLGVPLGVMAA
HHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWKDKWPDNLVRLIAIVSAVTPSFFLALLLQILAGYVLHILPTTGRLPPTMTFSADITGL
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHH
MTIDSLLHGRLDVFGEAWRYLLLPSIALSAATMGQIARITRASMIDVSSQDYIEAARAFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
IPERLRVFKYMLRPSFVPPLTISGLEFASLIGNAFVIELVFAWPGMAAYGVRTIMQKDLN
CHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AVMGVVVVSGVFFVLVNLVIDVLVGFVDPRVRIRGHR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC
>Mature Secondary Structure
MLFLVRRVLWSILVLVGLSIVIFGIARGMPGDPARLALGPRATQEQVNGLSHSLGLDRPL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCHH
YEQYGMFVSGLAKGDLGLSLLTKRPVNDDIRDTFAATFELVLATISLAFVLGVPLGVMAA
HHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWKDKWPDNLVRLIAIVSAVTPSFFLALLLQILAGYVLHILPTTGRLPPTMTFSADITGL
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHH
MTIDSLLHGRLDVFGEAWRYLLLPSIALSAATMGQIARITRASMIDVSSQDYIEAARAFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
IPERLRVFKYMLRPSFVPPLTISGLEFASLIGNAFVIELVFAWPGMAAYGVRTIMQKDLN
CHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AVMGVVVVSGVFFVLVNLVIDVLVGFVDPRVRIRGHR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]