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The map label for this gene is ygeX [H]

Identifier: 13476574

GI number: 13476574

Start: 6552349

End: 6553434

Strand: Direct

Name: ygeX [H]

Synonym: mlr7936

Alternate gene names: 13476574

Gene position: 6552349-6553434 (Clockwise)

Preceding gene: 13476571

Following gene: 13476575

Centisome position: 93.13

GC content: 67.59

Gene sequence:

>1086_bases
ATGACGCCGCTGTGCGCGCTGCCGGCGCTGGCGAGGGAATTCGGAGTTGGCACCATCCACGTCAAGGATGAGGGCTTTCG
TCTCGGCCTCGGCAGCTTCAAGGCGTTGGGTGGCGCCTATGCTGTCTTCCGTCTTGTGCTGGAAGAGGCAGGCAAGCGCC
TTGGCCGCCCTGTCGATGTCGAGGATCTCGATCGTGCCGATGTTCGCTCGGTCGCCGCAAAGATGACCTTTGCCTGCGCC
ACCGACGGCAATCACGGCCGCTCTGTCGCGCAAGGCGCCGAGCTTGCCGGCGCCAGGGCCGTGATCTTTGTCCATGCCGG
CGTCAGCGACGAGCGCATCTCGGCAATCGCCCGCTACGGCGCCGAGATGGTTCGCGTCAACGGTAATTATGACGATTCGG
TCAGGCAAGCGGCGCAGGTCGCGGCCGAGAAGGGCTGGAGCGTGGTGTCGGATACGTCGTGGCCGGGTTATGAGCGCATC
CCCGGCCTGGTGATGCAGGGCTATACGGCGATCGTGCGCGAAGCACTGCGCCAGCTCAGCGAACCGCCAACCCACGTCTT
CGTCCAGGCCGGCGTCGGCGGCATCGCCGCCGCGGTGGCCGGCCACCTCGCCATCGTGCTTGGCGACGCCAGGCCAACCT
TCATCGTCGTCGAGCCGGCGCGCGCGGCCTGCATTGTCGCGGCTGCCCGGGCAGGGCATGTGGTCAAGGTGGCGCACGAT
CAGCCGACGGTCATGGCCATGCTTGAATGCTATGAAGCCTCGCAGGTCGCCTGGCGCGTGCTGGCGCGCGTCGCCGACGC
CTTCATGACCGTGGACGAGCACGACGCCGTCGCGGTGATGCGGCGGTTGGCACGACCGGCCGGCAGCGATCCGGTGATCG
TTGCCGGCGAGAGTGGCGGCGTCGGCCTTGCCGGACTGATCCGGGCGATGGCCGAGAACAGGACCGATCTCGGCCTCGAC
GGCAAATCCCGCGTGCTGGTGATCAACACCGAAGGTGCCACCGACCCGCATCGCTATGCCGAACTGGTCGGCTTGAGCCC
GGCCGATGTGCTGGCCGGCAAGCTCGCCGCCGAGGCAACATCGTGA

Upstream 100 bases:

>100_bases
CTTGCACGGCAAGCCGCTTGATGCCGCCGATGCCGAAACCCTCGGGATCGCGGGCGCCGACACGGTCGAGCGCTTTCTGG
CCCATCGTGACAATCACGCA

Downstream 100 bases:

>100_bases
TCGCGGTCGACGCGCAGCGCCTGCTTGGCCGAATCCGCGAACTCGGCGCCGTTGGCCGCGACGGGGAGGGCAGGCTGACC
CGGCTGGCGGCCTCCGACAC

Product: diaminopropionate ammonia-lyase

Products: NA

Alternate protein names: Diaminopropionatase; Alpha,beta-diaminopropionate ammonia-lyase [H]

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MTPLCALPALAREFGVGTIHVKDEGFRLGLGSFKALGGAYAVFRLVLEEAGKRLGRPVDVEDLDRADVRSVAAKMTFACA
TDGNHGRSVAQGAELAGARAVIFVHAGVSDERISAIARYGAEMVRVNGNYDDSVRQAAQVAAEKGWSVVSDTSWPGYERI
PGLVMQGYTAIVREALRQLSEPPTHVFVQAGVGGIAAAVAGHLAIVLGDARPTFIVVEPARAACIVAAARAGHVVKVAHD
QPTVMAMLECYEASQVAWRVLARVADAFMTVDEHDAVAVMRRLARPAGSDPVIVAGESGGVGLAGLIRAMAENRTDLGLD
GKSRVLVINTEGATDPHRYAELVGLSPADVLAGKLAAEATS

Sequences:

>Translated_361_residues
MTPLCALPALAREFGVGTIHVKDEGFRLGLGSFKALGGAYAVFRLVLEEAGKRLGRPVDVEDLDRADVRSVAAKMTFACA
TDGNHGRSVAQGAELAGARAVIFVHAGVSDERISAIARYGAEMVRVNGNYDDSVRQAAQVAAEKGWSVVSDTSWPGYERI
PGLVMQGYTAIVREALRQLSEPPTHVFVQAGVGGIAAAVAGHLAIVLGDARPTFIVVEPARAACIVAAARAGHVVKVAHD
QPTVMAMLECYEASQVAWRVLARVADAFMTVDEHDAVAVMRRLARPAGSDPVIVAGESGGVGLAGLIRAMAENRTDLGLD
GKSRVLVINTEGATDPHRYAELVGLSPADVLAGKLAAEATS
>Mature_360_residues
TPLCALPALAREFGVGTIHVKDEGFRLGLGSFKALGGAYAVFRLVLEEAGKRLGRPVDVEDLDRADVRSVAAKMTFACAT
DGNHGRSVAQGAELAGARAVIFVHAGVSDERISAIARYGAEMVRVNGNYDDSVRQAAQVAAEKGWSVVSDTSWPGYERIP
GLVMQGYTAIVREALRQLSEPPTHVFVQAGVGGIAAAVAGHLAIVLGDARPTFIVVEPARAACIVAAARAGHVVKVAHDQ
PTVMAMLECYEASQVAWRVLARVADAFMTVDEHDAVAVMRRLARPAGSDPVIVAGESGGVGLAGLIRAMAENRTDLGLDG
KSRVLVINTEGATDPHRYAELVGLSPADVLAGKLAAEATS

Specific function: Catalyzes the alpha,beta-elimination reaction of both L- and D-alpha,beta-diaminopropionate, the most suitable substrates to form pyruvate and ammonia. The L- and D-isomers of serine are also degraded, though slowly; it is the only serine dehydratase whic

COG id: COG1171

COG function: function code E; Threonine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789235, Length=351, Percent_Identity=43.3048433048433, Blast_Score=269, Evalue=2e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010081
- InterPro:   IPR019871
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.3.1.15 [H]

Molecular weight: Translated: 37737; Mature: 37605

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLCALPALAREFGVGTIHVKDEGFRLGLGSFKALGGAYAVFRLVLEEAGKRLGRPVDV
CCCCHHHHHHHHHHCCCEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EDLDRADVRSVAAKMTFACATDGNHGRSVAQGAELAGARAVIFVHAGVSDERISAIARYG
HHCCHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCC
AEMVRVNGNYDDSVRQAAQVAAEKGWSVVSDTSWPGYERIPGLVMQGYTAIVREALRQLS
CEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHC
EPPTHVFVQAGVGGIAAAVAGHLAIVLGDARPTFIVVEPARAACIVAAARAGHVVKVAHD
CCCCEEEEECCCCHHHHHHHHCEEEEEECCCCEEEEECCCCHHHHHHHHCCCCEEEEECC
QPTVMAMLECYEASQVAWRVLARVADAFMTVDEHDAVAVMRRLARPAGSDPVIVAGESGG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEECCCCC
VGLAGLIRAMAENRTDLGLDGKSRVLVINTEGATDPHRYAELVGLSPADVLAGKLAAEAT
CCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCC
S
C
>Mature Secondary Structure 
TPLCALPALAREFGVGTIHVKDEGFRLGLGSFKALGGAYAVFRLVLEEAGKRLGRPVDV
CCCHHHHHHHHHHCCCEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EDLDRADVRSVAAKMTFACATDGNHGRSVAQGAELAGARAVIFVHAGVSDERISAIARYG
HHCCHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCC
AEMVRVNGNYDDSVRQAAQVAAEKGWSVVSDTSWPGYERIPGLVMQGYTAIVREALRQLS
CEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHC
EPPTHVFVQAGVGGIAAAVAGHLAIVLGDARPTFIVVEPARAACIVAAARAGHVVKVAHD
CCCCEEEEECCCCHHHHHHHHCEEEEEECCCCEEEEECCCCHHHHHHHHCCCCEEEEECC
QPTVMAMLECYEASQVAWRVLARVADAFMTVDEHDAVAVMRRLARPAGSDPVIVAGESGG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEECCCCC
VGLAGLIRAMAENRTDLGLDGKSRVLVINTEGATDPHRYAELVGLSPADVLAGKLAAEAT
CCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]