Click here to switch to the map view.

The map label for this gene is erfK [H]

Identifier: 13476341

GI number: 13476341

Start: 6322506

End: 6323339

Strand: Reverse

Name: erfK [H]

Synonym: mll7632

Alternate gene names: 13476341

Gene position: 6323339-6322506 (Counterclockwise)

Preceding gene: 13476342

Following gene: 13476333

Centisome position: 89.87

GC content: 65.59

Gene sequence:

>834_bases
ATGTCCATAACCGAAATCGAATCCTATCGCCTGAGCCGTCGCGGCTTCCTCAATGCCGCAGCATTGGGCGCCGCATCGAT
CGCGGTTTCCGCATGCGCCACCACTGGACCGGGCCCTGTCGAGCCGCCGCCGCCGCCAACCTATGTCGAGCCGCCGCTCG
CCGACTATGCGTCGATGTACGCGGCCGTCAGCGATGGCGGCTTCGACCTGCCGGCCATCCCCTTCGACAGGATCGATCCA
CAGTTCCTGCGCCAGATCGTTCCCGACCCGACCGGGCAGAAGCCGGGAACGATCATCGTCGATACGACGGGCCATTTCCT
CTATCTGGTTCGTCCGGGCGGCCAGGCCATCCGCTACGGCGTCGGTCTCGGCCGGGCCGGCTTCGAATGGTCGGGCGATG
CCGTCGTGCAGTGGAAGCAGAAATGGCCGAAATGGACGCCGCCGGATGAAATGATCGCCAGGCAGCCGGAATTGAAGCCA
TATAGCGCCGACAATGGCGGCATGCCCGGCGGGCTGAAGAACCCGCTCGGCGCCCGCGCGCTCTATCTCTTCCAGGGCAA
TGTGGACACGCTCTATCGCCTGCACGGCTCGCCGGAATGGAAGTCGATCGGCAAATCGGTGTCGTCGGGCTGCGTGCGCC
TGATGAACCAGGACATCATCGACCTCTACGACCGCGTGCCCTCGAAAACCCCCGTCATCGTGACCAGCGACGCCAGCCAG
CCGATGGCGGCGGCAGCGACGGCGAACCACAAGGCCATCCCGATCGACGCCGGCGTGCCGGACGGATCGGTGCTGCTCGG
CCCGGTCAAGGCGGTGACGAACGCGATCTTCTGA

Upstream 100 bases:

>100_bases
AGAATCGGAACCGCCTATCGCCCCAGGTGTTGTCAGGCACCTGCAACGGTCGTCGGCATATTGACGCTTTGTTGCGACTT
GAGTCTTAAAGAAGGCAGTC

Downstream 100 bases:

>100_bases
GTTTGTCGAAGAGCGGCGGACAGCCGTCGCTCCTGCCACGCCTGTCGGTGCCCGCAGCCTAGAACGATTTCGGGGGCGGG
ATCCGTCAGAGGCCAAGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MSITEIESYRLSRRGFLNAAALGAASIAVSACATTGPGPVEPPPPPTYVEPPLADYASMYAAVSDGGFDLPAIPFDRIDP
QFLRQIVPDPTGQKPGTIIVDTTGHFLYLVRPGGQAIRYGVGLGRAGFEWSGDAVVQWKQKWPKWTPPDEMIARQPELKP
YSADNGGMPGGLKNPLGARALYLFQGNVDTLYRLHGSPEWKSIGKSVSSGCVRLMNQDIIDLYDRVPSKTPVIVTSDASQ
PMAAAATANHKAIPIDAGVPDGSVLLGPVKAVTNAIF

Sequences:

>Translated_277_residues
MSITEIESYRLSRRGFLNAAALGAASIAVSACATTGPGPVEPPPPPTYVEPPLADYASMYAAVSDGGFDLPAIPFDRIDP
QFLRQIVPDPTGQKPGTIIVDTTGHFLYLVRPGGQAIRYGVGLGRAGFEWSGDAVVQWKQKWPKWTPPDEMIARQPELKP
YSADNGGMPGGLKNPLGARALYLFQGNVDTLYRLHGSPEWKSIGKSVSSGCVRLMNQDIIDLYDRVPSKTPVIVTSDASQ
PMAAAATANHKAIPIDAGVPDGSVLLGPVKAVTNAIF
>Mature_276_residues
SITEIESYRLSRRGFLNAAALGAASIAVSACATTGPGPVEPPPPPTYVEPPLADYASMYAAVSDGGFDLPAIPFDRIDPQ
FLRQIVPDPTGQKPGTIIVDTTGHFLYLVRPGGQAIRYGVGLGRAGFEWSGDAVVQWKQKWPKWTPPDEMIARQPELKPY
SADNGGMPGGLKNPLGARALYLFQGNVDTLYRLHGSPEWKSIGKSVSSGCVRLMNQDIIDLYDRVPSKTPVIVTSDASQP
MAAAATANHKAIPIDAGVPDGSVLLGPVKAVTNAIF

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=140, Percent_Identity=34.2857142857143, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787968, Length=142, Percent_Identity=35.9154929577465, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787040, Length=158, Percent_Identity=33.5443037974684, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 29469; Mature: 29338

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITEIESYRLSRRGFLNAAALGAASIAVSACATTGPGPVEPPPPPTYVEPPLADYASMY
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AAVSDGGFDLPAIPFDRIDPQFLRQIVPDPTGQKPGTIIVDTTGHFLYLVRPGGQAIRYG
HHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEE
VGLGRAGFEWSGDAVVQWKQKWPKWTPPDEMIARQPELKPYSADNGGMPGGLKNPLGARA
CCCCCCCCCCCCCCEEEEHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEE
LYLFQGNVDTLYRLHGSPEWKSIGKSVSSGCVRLMNQDIIDLYDRVPSKTPVIVTSDASQ
EEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
PMAAAATANHKAIPIDAGVPDGSVLLGPVKAVTNAIF
CCCHHHCCCCCEEEECCCCCCCCEEEHHHHHHHHHCC
>Mature Secondary Structure 
SITEIESYRLSRRGFLNAAALGAASIAVSACATTGPGPVEPPPPPTYVEPPLADYASMY
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AAVSDGGFDLPAIPFDRIDPQFLRQIVPDPTGQKPGTIIVDTTGHFLYLVRPGGQAIRYG
HHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEE
VGLGRAGFEWSGDAVVQWKQKWPKWTPPDEMIARQPELKPYSADNGGMPGGLKNPLGARA
CCCCCCCCCCCCCCEEEEHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEE
LYLFQGNVDTLYRLHGSPEWKSIGKSVSSGCVRLMNQDIIDLYDRVPSKTPVIVTSDASQ
EEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
PMAAAATANHKAIPIDAGVPDGSVLLGPVKAVTNAIF
CCCHHHCCCCCEEEECCCCCCCCEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]