| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is rbsA [H]
Identifier: 13476337
GI number: 13476337
Start: 6319566
End: 6320390
Strand: Direct
Name: rbsA [H]
Synonym: mlr7627
Alternate gene names: 13476337
Gene position: 6319566-6320390 (Clockwise)
Preceding gene: 13476336
Following gene: 13476338
Centisome position: 89.82
GC content: 66.91
Gene sequence:
>825_bases ATGACCACGCCCCTGCTCAGGCTGACTGGAATCAACAAGTCGTTCGGCCCGATCGACGTGCTCCACGACATCTCGCTCGA GGTCAACAGAGGCGAGGTGCTTTGCCTGCTCGGCGACAACGGCGCCGGCAAGTCGACGCTGATCAAAATTCTCTCCGGCG TCCACCGGCCGACATCGGGCACGATGGAAATGGACGGCAGATCGGTCGCCTTCGACAGCCCCCGCGACGCCAGCGACCAT GGCATCGCCACCGTCCACCAGTTCGGCGGCACATTCCCGCTGATGAGCATCGGCCGCTCCTTCTTCGTCGGCGCCGAGCC GACGCGGCGCTGGGGGCCGCTCACCATCTACGACCGCAAGCGGGCCAACGAGATCGCCGTCACCGAGATGCGCCAGCTCG GCATCACCCGCATCGACGACGGCGATCGCCTGGTCGGCGGATTGTCCGGAGGTGAGCGACAGGCGCTGGCCATCGCGCGA GCTGTCCACTTCGGCGCCAGCGTGCTGATCCTCGATGAGCCGACCGCGGCCCTTGGCGTCAAGGAGGCGGCGCATGTCCT ACGCATCGTCCTGCAGGCGCGCCGCAAGGGCATCGCGGTGATCTTCATCACCCACAATGTCGTCCATGCGCTCACCGTCG GCGACCACTTCGCCGTGCTCATCAGAGGCGCCAAGGCCGCCGACTTCCGCAAGGGCGAGAAAAGCCGCGAGGCGATCACC GACCTGATGGCGGGCGGCGAGCAGATGGCCGAACTCGAAGCCGAGATCGAGAGCTTCTCGGCGGCTGACAACGGGCATGC GCCGCAGGGCGCGAGCCATGCGTGA
Upstream 100 bases:
>100_bases TGATCATCGGTGTCCTGCTGCTGGCGGCCGTGCTGATGAACAACACTTTCCGCACCATGGCACTGACCTACGCGCCGCGC ACCAAACCGAGGGCACGCTG
Downstream 100 bases:
>100_bases CCAGTGAAGACGCCCATCTCTTCCTCCCGGGCATCTTCCTGTACGGCCGGCGGAATGCGTGGTCCGCCGGCCGCCTTTTT CAACCAACCAGAGAACAGAC
Product: ABC transport protein, ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MTTPLLRLTGINKSFGPIDVLHDISLEVNRGEVLCLLGDNGAGKSTLIKILSGVHRPTSGTMEMDGRSVAFDSPRDASDH GIATVHQFGGTFPLMSIGRSFFVGAEPTRRWGPLTIYDRKRANEIAVTEMRQLGITRIDDGDRLVGGLSGGERQALAIAR AVHFGASVLILDEPTAALGVKEAAHVLRIVLQARRKGIAVIFITHNVVHALTVGDHFAVLIRGAKAADFRKGEKSREAIT DLMAGGEQMAELEAEIESFSAADNGHAPQGASHA
Sequences:
>Translated_274_residues MTTPLLRLTGINKSFGPIDVLHDISLEVNRGEVLCLLGDNGAGKSTLIKILSGVHRPTSGTMEMDGRSVAFDSPRDASDH GIATVHQFGGTFPLMSIGRSFFVGAEPTRRWGPLTIYDRKRANEIAVTEMRQLGITRIDDGDRLVGGLSGGERQALAIAR AVHFGASVLILDEPTAALGVKEAAHVLRIVLQARRKGIAVIFITHNVVHALTVGDHFAVLIRGAKAADFRKGEKSREAIT DLMAGGEQMAELEAEIESFSAADNGHAPQGASHA >Mature_273_residues TTPLLRLTGINKSFGPIDVLHDISLEVNRGEVLCLLGDNGAGKSTLIKILSGVHRPTSGTMEMDGRSVAFDSPRDASDHG IATVHQFGGTFPLMSIGRSFFVGAEPTRRWGPLTIYDRKRANEIAVTEMRQLGITRIDDGDRLVGGLSGGERQALAIARA VHFGASVLILDEPTAALGVKEAAHVLRIVLQARRKGIAVIFITHNVVHALTVGDHFAVLIRGAKAADFRKGEKSREAITD LMAGGEQMAELEAEIESFSAADNGHAPQGASHA
Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI105990541, Length=224, Percent_Identity=26.7857142857143, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI116734710, Length=201, Percent_Identity=27.363184079602, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI21536376, Length=203, Percent_Identity=28.0788177339901, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI9961252, Length=261, Percent_Identity=24.904214559387, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI4505771, Length=261, Percent_Identity=24.904214559387, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI9961250, Length=261, Percent_Identity=24.904214559387, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI27881501, Length=220, Percent_Identity=25.9090909090909, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI30795238, Length=220, Percent_Identity=25.9090909090909, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI31657092, Length=210, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI27262624, Length=222, Percent_Identity=25.6756756756757, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI27262626, Length=222, Percent_Identity=25.6756756756757, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI45446740, Length=209, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI47078218, Length=209, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI27477115, Length=217, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI171184400, Length=225, Percent_Identity=30.6666666666667, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI9665248, Length=212, Percent_Identity=29.7169811320755, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI150417984, Length=227, Percent_Identity=26.8722466960352, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1790525, Length=260, Percent_Identity=32.3076923076923, Blast_Score=146, Evalue=1e-36, Organism=Escherichia coli, GI48995001, Length=243, Percent_Identity=34.156378600823, Blast_Score=136, Evalue=1e-33, Organism=Escherichia coli, GI1790190, Length=241, Percent_Identity=30.7053941908714, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1788210, Length=245, Percent_Identity=30.2040816326531, Blast_Score=127, Evalue=6e-31, Organism=Escherichia coli, GI1788472, Length=231, Percent_Identity=32.4675324675325, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1789991, Length=252, Percent_Identity=29.3650793650794, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1787792, Length=236, Percent_Identity=31.3559322033898, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI87081791, Length=223, Percent_Identity=30.4932735426009, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1788897, Length=245, Percent_Identity=30.2040816326531, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787370, Length=245, Percent_Identity=30.2040816326531, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1788761, Length=227, Percent_Identity=32.15859030837, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1787089, Length=209, Percent_Identity=32.5358851674641, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790467, Length=219, Percent_Identity=31.5068493150685, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787029, Length=227, Percent_Identity=28.1938325991189, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87082268, Length=224, Percent_Identity=29.4642857142857, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789672, Length=220, Percent_Identity=26.8181818181818, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI87081709, Length=221, Percent_Identity=27.6018099547511, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790739, Length=224, Percent_Identity=29.4642857142857, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787758, Length=222, Percent_Identity=31.5315315315315, Blast_Score=88, Evalue=8e-19, Organism=Escherichia coli, GI87082267, Length=219, Percent_Identity=31.5068493150685, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1789962, Length=238, Percent_Identity=28.1512605042017, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1787105, Length=212, Percent_Identity=33.0188679245283, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789864, Length=237, Percent_Identity=24.4725738396624, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI2367384, Length=180, Percent_Identity=30.5555555555556, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87081834, Length=220, Percent_Identity=27.2727272727273, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1786253, Length=220, Percent_Identity=29.0909090909091, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1786398, Length=228, Percent_Identity=30.7017543859649, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786345, Length=240, Percent_Identity=30.8333333333333, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787712, Length=219, Percent_Identity=28.310502283105, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786803, Length=231, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789032, Length=208, Percent_Identity=28.3653846153846, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786563, Length=248, Percent_Identity=26.2096774193548, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787759, Length=247, Percent_Identity=29.9595141700405, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1790544, Length=233, Percent_Identity=28.755364806867, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788165, Length=207, Percent_Identity=29.951690821256, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786872, Length=229, Percent_Identity=28.3842794759825, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI48994997, Length=234, Percent_Identity=28.2051282051282, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1788225, Length=249, Percent_Identity=26.1044176706827, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787500, Length=205, Percent_Identity=28.2926829268293, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789891, Length=196, Percent_Identity=31.6326530612245, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790162, Length=224, Percent_Identity=26.3392857142857, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789593, Length=212, Percent_Identity=28.7735849056604, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1788450, Length=224, Percent_Identity=25.8928571428571, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786319, Length=230, Percent_Identity=27.3913043478261, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI145693107, Length=221, Percent_Identity=28.5067873303167, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788506, Length=218, Percent_Identity=27.5229357798165, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787972, Length=226, Percent_Identity=28.3185840707965, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17565586, Length=203, Percent_Identity=29.5566502463054, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI115533608, Length=212, Percent_Identity=27.8301886792453, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17510237, Length=229, Percent_Identity=23.5807860262009, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17541710, Length=211, Percent_Identity=30.8056872037915, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193209708, Length=204, Percent_Identity=30.3921568627451, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193202349, Length=205, Percent_Identity=32.1951219512195, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI221512771, Length=222, Percent_Identity=27.4774774774775, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI28574150, Length=201, Percent_Identity=25.3731343283582, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI116007328, Length=201, Percent_Identity=25.3731343283582, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24648314, Length=218, Percent_Identity=24.7706422018349, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24643674, Length=220, Percent_Identity=28.6363636363636, Blast_Score=70, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015861 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.17 [H]
Molecular weight: Translated: 29215; Mature: 29084
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPLLRLTGINKSFGPIDVLHDISLEVNRGEVLCLLGDNGAGKSTLIKILSGVHRPTSG CCCCEEEEECCCCCCCCCCEEEECEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCC TMEMDGRSVAFDSPRDASDHGIATVHQFGGTFPLMSIGRSFFVGAEPTRRWGPLTIYDRK CEEECCCEEECCCCCCCCCCCCEEHHHCCCCCHHHHCCCCEEECCCCCCCCCCEEEECCC RANEIAVTEMRQLGITRIDDGDRLVGGLSGGERQALAIARAVHFGASVLILDEPTAALGV CCCHHHHHHHHHCCCEEECCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHH KEAAHVLRIVLQARRKGIAVIFITHNVVHALTVGDHFAVLIRGAKAADFRKGEKSREAIT HHHHHHHHHHHHHHHCCEEEEEEECCEEEEEECCCEEEEEEECCCCHHHHCCCHHHHHHH DLMAGGEQMAELEAEIESFSAADNGHAPQGASHA HHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure TTPLLRLTGINKSFGPIDVLHDISLEVNRGEVLCLLGDNGAGKSTLIKILSGVHRPTSG CCCEEEEECCCCCCCCCCEEEECEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCC TMEMDGRSVAFDSPRDASDHGIATVHQFGGTFPLMSIGRSFFVGAEPTRRWGPLTIYDRK CEEECCCEEECCCCCCCCCCCCEEHHHCCCCCHHHHCCCCEEECCCCCCCCCCEEEECCC RANEIAVTEMRQLGITRIDDGDRLVGGLSGGERQALAIARAVHFGASVLILDEPTAALGV CCCHHHHHHHHHCCCEEECCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHH KEAAHVLRIVLQARRKGIAVIFITHNVVHALTVGDHFAVLIRGAKAADFRKGEKSREAIT HHHHHHHHHHHHHHHCCEEEEEEECCEEEEEECCCEEEEEEECCCCHHHHCCCHHHHHHH DLMAGGEQMAELEAEIESFSAADNGHAPQGASHA HHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]