Click here to switch to the map view.

The map label for this gene is yphD [H]

Identifier: 13476336

GI number: 13476336

Start: 6318424

End: 6319566

Strand: Direct

Name: yphD [H]

Synonym: mlr7626

Alternate gene names: 13476336

Gene position: 6318424-6319566 (Clockwise)

Preceding gene: 13476335

Following gene: 13476337

Centisome position: 89.8

GC content: 64.39

Gene sequence:

>1143_bases
GTGTCCGGCTCATCCGAGGGCCGGCATCATCTGCCCCGCGCCAGGCTCTCCATTGTTCAAGCCAGGGACATTTCGATGAC
ATCCCAAGCCCACCACCAACCCGCGATGGCAGCCACTGCGCCACCCTCTCAGCACTCTTCGATGCCCTCGATCGGCAGTC
TCGTGCGCCGGCCCGAGGTCGGTTCGCTGATCGGCATGGTCGCCGTTCTGGTCTTCTTCTCGATCTTCGGCGGCGCCAAT
TTCATGTCGGCCGGCGGGGCCGCGAGCTGGCTGAACGTCGCCTCGGAACTCGGCATCATCGCGCTTCCCATCGGGTTGCT
GATGATCGCCGGGCATCTCGATCTCTCCGTCGGCTCGATGGTCCCCGCCAGTTCGATGACCATTGCCATCCTGTCGGGGC
ACTATGGCCTGCCGATCATCGTCGGAATCCTCGCCGCGCTCGGCCTTGGGCTCGCCGTCGGCTTCGTCAACGGCGTGCTG
GTGATTCGCACCAAGGTGCCGTCCTTCGTCGTCACCTTGGCCACGCTGTTCGCGTTGGCCGGCCTGACACTCGGCCTCTC
GGTCATCCTGTCCGGCAGCACCAGCGTCGCGCTGAAGAGCGGGCCGACCGCCAAGCTCCTGTTCGGCGACTATCTCGGCG
GCAAGTTCGAGGTGACGCTGTTCTGGTGGATCGCCGCCATCCTGATCGTCGGCTTCATCCTGAATTTCTCGCGTTTCGGC
AACTGGATCCTGGCCATGGGCGGTGACGCCGTCAGCGCTCGCAATGCCGGCATACCGACAGACCGGGTGACCATAGCGCT
GTTCATGAGCAGCGGCCTGTGCGCCTCGTTCGTCGGCATGTCGCAGGCCATCCTATACAACAGCGCCCAGGTGGCCGCCG
GGCAGTCCTTCATCTTCAATTCGATCATCGCGGTGGTCATCGGCGGCGTGCTGCTCACCGGCGGCTACGGTTCGGTGGTC
GGCATCGTGCTCGGCACCCTGACCTTCGCCATCGTCAACCAGGGCATTTTCTACACCGGCTTCGACGCCAACTGGGCGAG
CCTGATCATCGGTGTCCTGCTGCTGGCGGCCGTGCTGATGAACAACACTTTCCGCACCATGGCACTGACCTACGCGCCGC
GCACCAAACCGAGGGCACGCTGA

Upstream 100 bases:

>100_bases
ACCAAGCCGGTGCTGACCGGACCGGGGATCGTCGACGCTGCCAATGTCGACGCGACAATGGCCGGCGCCGCAGCCGGCGC
TCGCTAGCTTGCGCAGATTG

Downstream 100 bases:

>100_bases
TGACCACGCCCCTGCTCAGGCTGACTGGAATCAACAAGTCGTTCGGCCCGATCGACGTGCTCCACGACATCTCGCTCGAG
GTCAACAGAGGCGAGGTGCT

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MSGSSEGRHHLPRARLSIVQARDISMTSQAHHQPAMAATAPPSQHSSMPSIGSLVRRPEVGSLIGMVAVLVFFSIFGGAN
FMSAGGAASWLNVASELGIIALPIGLLMIAGHLDLSVGSMVPASSMTIAILSGHYGLPIIVGILAALGLGLAVGFVNGVL
VIRTKVPSFVVTLATLFALAGLTLGLSVILSGSTSVALKSGPTAKLLFGDYLGGKFEVTLFWWIAAILIVGFILNFSRFG
NWILAMGGDAVSARNAGIPTDRVTIALFMSSGLCASFVGMSQAILYNSAQVAAGQSFIFNSIIAVVIGGVLLTGGYGSVV
GIVLGTLTFAIVNQGIFYTGFDANWASLIIGVLLLAAVLMNNTFRTMALTYAPRTKPRAR

Sequences:

>Translated_380_residues
MSGSSEGRHHLPRARLSIVQARDISMTSQAHHQPAMAATAPPSQHSSMPSIGSLVRRPEVGSLIGMVAVLVFFSIFGGAN
FMSAGGAASWLNVASELGIIALPIGLLMIAGHLDLSVGSMVPASSMTIAILSGHYGLPIIVGILAALGLGLAVGFVNGVL
VIRTKVPSFVVTLATLFALAGLTLGLSVILSGSTSVALKSGPTAKLLFGDYLGGKFEVTLFWWIAAILIVGFILNFSRFG
NWILAMGGDAVSARNAGIPTDRVTIALFMSSGLCASFVGMSQAILYNSAQVAAGQSFIFNSIIAVVIGGVLLTGGYGSVV
GIVLGTLTFAIVNQGIFYTGFDANWASLIIGVLLLAAVLMNNTFRTMALTYAPRTKPRAR
>Mature_379_residues
SGSSEGRHHLPRARLSIVQARDISMTSQAHHQPAMAATAPPSQHSSMPSIGSLVRRPEVGSLIGMVAVLVFFSIFGGANF
MSAGGAASWLNVASELGIIALPIGLLMIAGHLDLSVGSMVPASSMTIAILSGHYGLPIIVGILAALGLGLAVGFVNGVLV
IRTKVPSFVVTLATLFALAGLTLGLSVILSGSTSVALKSGPTAKLLFGDYLGGKFEVTLFWWIAAILIVGFILNFSRFGN
WILAMGGDAVSARNAGIPTDRVTIALFMSSGLCASFVGMSQAILYNSAQVAAGQSFIFNSIIAVVIGGVLLTGGYGSVVG
IVLGTLTFAIVNQGIFYTGFDANWASLIIGVLLLAAVLMNNTFRTMALTYAPRTKPRAR

Specific function: Probably part of the binding-protein-dependent transport system yphDEF. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=328, Percent_Identity=31.7073170731707, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI87082395, Length=274, Percent_Identity=33.5766423357664, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=31.2903225806452, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693152, Length=265, Percent_Identity=29.0566037735849, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787794, Length=265, Percent_Identity=30.188679245283, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI145693214, Length=259, Percent_Identity=32.046332046332, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790524, Length=255, Percent_Identity=29.8039215686275, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787793, Length=294, Percent_Identity=30.2721088435374, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789992, Length=134, Percent_Identity=32.089552238806, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 39299; Mature: 39168

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGSSEGRHHLPRARLSIVQARDISMTSQAHHQPAMAATAPPSQHSSMPSIGSLVRRPEV
CCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCH
GSLIGMVAVLVFFSIFGGANFMSAGGAASWLNVASELGIIALPIGLLMIAGHLDLSVGSM
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCC
VPASSMTIAILSGHYGLPIIVGILAALGLGLAVGFVNGVLVIRTKVPSFVVTLATLFALA
CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHH
GLTLGLSVILSGSTSVALKSGPTAKLLFGDYLGGKFEVTLFWWIAAILIVGFILNFSRFG
HHHHHHHHEECCCCEEEECCCCCEEEEEHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHC
NWILAMGGDAVSARNAGIPTDRVTIALFMSSGLCASFVGMSQAILYNSAQVAAGQSFIFN
CEEEEECCCEECCCCCCCCCHHEEEEEEECCCHHHHHHHHHHHHHCCCHHHHCCHHHHHH
SIIAVVIGGVLLTGGYGSVVGIVLGTLTFAIVNQGIFYTGFDANWASLIIGVLLLAAVLM
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHH
NNTFRTMALTYAPRTKPRAR
CCCHHHEEEEECCCCCCCCC
>Mature Secondary Structure 
SGSSEGRHHLPRARLSIVQARDISMTSQAHHQPAMAATAPPSQHSSMPSIGSLVRRPEV
CCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCH
GSLIGMVAVLVFFSIFGGANFMSAGGAASWLNVASELGIIALPIGLLMIAGHLDLSVGSM
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCC
VPASSMTIAILSGHYGLPIIVGILAALGLGLAVGFVNGVLVIRTKVPSFVVTLATLFALA
CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHH
GLTLGLSVILSGSTSVALKSGPTAKLLFGDYLGGKFEVTLFWWIAAILIVGFILNFSRFG
HHHHHHHHEECCCCEEEECCCCCEEEEEHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHC
NWILAMGGDAVSARNAGIPTDRVTIALFMSSGLCASFVGMSQAILYNSAQVAAGQSFIFN
CEEEEECCCEECCCCCCCCCHHEEEEEEECCCHHHHHHHHHHHHHCCCHHHHCCHHHHHH
SIIAVVIGGVLLTGGYGSVVGIVLGTLTFAIVNQGIFYTGFDANWASLIIGVLLLAAVLM
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHH
NNTFRTMALTYAPRTKPRAR
CCCHHHEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]