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The map label for this gene is potC [H]

Identifier: 13476266

GI number: 13476266

Start: 6227457

End: 6228248

Strand: Direct

Name: potC [H]

Synonym: mlr7545

Alternate gene names: 13476266

Gene position: 6227457-6228248 (Clockwise)

Preceding gene: 13476265

Following gene: 13476267

Centisome position: 88.51

GC content: 61.87

Gene sequence:

>792_bases
ATGCTTGAAGCCTATCCGGACAACAGGCTGGCCCGCATCCTCCTTTGGGGTTTCTCCGCGCTGGCCATGGCATTCTTGAT
GCTGCCGACGCTGGTGGTCGTGCCGCTCTCCTTTTCGGCGTCCGATTTTCTCGAGTTTCCGCCGCGCGCATACTCGTTGC
GCTGGTACGAGAATTTCTTCGGTTCGGCGACATGGATGGCCGGCCTGAGGACGAGCCTGATCCTTGGGACGTTGACGGCG
ATGGTCGCGGTGCCCTTAGGGCTGCTGGCCTGCATCTCGATGAACCGGCTCGGCGGAAAGACCGCCTCAGCCATTCAAGG
TGTTCTGCTCGCCCCCTCCATCGTGCCGGGAATCCTGCTTGCGATCGGCCTCTTCTTCGTGCTGGCGGCGCAAGGCCTGG
TCGGAACGCTGTTCGGCGTGCTGGTCGGACATGTGGTGCTGGCCATTCCGGTGGCGTGCATTGTGCTGTTGCCTGCCGTG
GCCCGCTTCGACTGGAACCAGGTCCAGGCGGCGCGCAGCCTTGGCGCGGACTGGGCGAGGGCCATCGGCGGAATAATCGT
TCCGCAACTTCAGATCAGCCTGTTGTCGGCGACATTGATGGCCTTCCTGACCTCGCTCGACGAGTCCGTCATTTCGATCT
TCGTCGCGAGCGGTCGCAACAGCACCCTGCCGAAGCTCATGTTCCTGTCGCTACGTGATCAGATCGATCCGACAATCGCG
GCGATCTCGACATTGTGGACCGCCATCGTCGTGGTCGTCGTCCTGATCGTGACCCTTCGCCAAAAATCCTGA

Upstream 100 bases:

>100_bases
AGCGTCCTTGGCATTCTGCTCCTCGTTCTCATGGCGCTGATTGGTGTGATGTTCCTGGCGGCGCGTCGACTGATGGCGCG
CGACAAAACCGGCACGGCCC

Downstream 100 bases:

>100_bases
CCGAGACTGGAAACATGCCTGCCAATCATCACGCAGCCGACGATCTGACGGATCAACCAACGGACATACCCCAGGTGGGG
TTGGCGATCATCACCGGCTC

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MLEAYPDNRLARILLWGFSALAMAFLMLPTLVVVPLSFSASDFLEFPPRAYSLRWYENFFGSATWMAGLRTSLILGTLTA
MVAVPLGLLACISMNRLGGKTASAIQGVLLAPSIVPGILLAIGLFFVLAAQGLVGTLFGVLVGHVVLAIPVACIVLLPAV
ARFDWNQVQAARSLGADWARAIGGIIVPQLQISLLSATLMAFLTSLDESVISIFVASGRNSTLPKLMFLSLRDQIDPTIA
AISTLWTAIVVVVVLIVTLRQKS

Sequences:

>Translated_263_residues
MLEAYPDNRLARILLWGFSALAMAFLMLPTLVVVPLSFSASDFLEFPPRAYSLRWYENFFGSATWMAGLRTSLILGTLTA
MVAVPLGLLACISMNRLGGKTASAIQGVLLAPSIVPGILLAIGLFFVLAAQGLVGTLFGVLVGHVVLAIPVACIVLLPAV
ARFDWNQVQAARSLGADWARAIGGIIVPQLQISLLSATLMAFLTSLDESVISIFVASGRNSTLPKLMFLSLRDQIDPTIA
AISTLWTAIVVVVVLIVTLRQKS
>Mature_263_residues
MLEAYPDNRLARILLWGFSALAMAFLMLPTLVVVPLSFSASDFLEFPPRAYSLRWYENFFGSATWMAGLRTSLILGTLTA
MVAVPLGLLACISMNRLGGKTASAIQGVLLAPSIVPGILLAIGLFFVLAAQGLVGTLFGVLVGHVVLAIPVACIVLLPAV
ARFDWNQVQAARSLGADWARAIGGIIVPQLQISLLSATLMAFLTSLDESVISIFVASGRNSTLPKLMFLSLRDQIDPTIA
AISTLWTAIVVVVVLIVTLRQKS

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=248, Percent_Identity=27.0161290322581, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787368, Length=229, Percent_Identity=22.2707423580786, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787081, Length=240, Percent_Identity=28.75, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28067; Mature: 28067

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEAYPDNRLARILLWGFSALAMAFLMLPTLVVVPLSFSASDFLEFPPRAYSLRWYENFF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHH
GSATWMAGLRTSLILGTLTAMVAVPLGLLACISMNRLGGKTASAIQGVLLAPSIVPGILL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
AIGLFFVLAAQGLVGTLFGVLVGHVVLAIPVACIVLLPAVARFDWNQVQAARSLGADWAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHH
AIGGIIVPQLQISLLSATLMAFLTSLDESVISIFVASGRNSTLPKLMFLSLRDQIDPTIA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
AISTLWTAIVVVVVLIVTLRQKS
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLEAYPDNRLARILLWGFSALAMAFLMLPTLVVVPLSFSASDFLEFPPRAYSLRWYENFF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHH
GSATWMAGLRTSLILGTLTAMVAVPLGLLACISMNRLGGKTASAIQGVLLAPSIVPGILL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
AIGLFFVLAAQGLVGTLFGVLVGHVVLAIPVACIVLLPAVARFDWNQVQAARSLGADWAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHH
AIGGIIVPQLQISLLSATLMAFLTSLDESVISIFVASGRNSTLPKLMFLSLRDQIDPTIA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
AISTLWTAIVVVVVLIVTLRQKS
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]