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The map label for this gene is yvbU [H]

Identifier: 13476190

GI number: 13476190

Start: 6152096

End: 6153007

Strand: Reverse

Name: yvbU [H]

Synonym: mll7443

Alternate gene names: 13476190

Gene position: 6153007-6152096 (Counterclockwise)

Preceding gene: 13476193

Following gene: 13476189

Centisome position: 87.45

GC content: 63.49

Gene sequence:

>912_bases
ATGAGCCCCAGCCTCACCCAATTGCGTTATCTGGTCGCCGTCGCCCGCCATGGCAGCGTCACCGGCGCGGCCAGGACGCT
GAACATTTCGCAGCCCTCGATTTCGGTGGCGATCGACGCGATCGAAAAGGATTTCGGCCAGAAACTGTTCGTGCGCCAGC
GCGGCAGCGGCGTTTCGCTGACCTCCTTCGGCCGTGCCGTCGTGGCGAAGGCGAAACAGGTTCTTGCCGAGGCGGACGAA
CTGATGAGCCTGAGCTCGGGCAATTCAGCCGTCGGCGGCGAGCTGGTGCTTGGATGTTTCGAGGATCTGGCGCCCTATTT
CGCGCCGGGTCTGATCCGCGCTTTTTCCGAACGCCATCCAGATGTCGCCGTCATCGTTCGCGACGAAACGTTCGAGACGC
TCGGACGGCGTCTCGCTGACGCCGCCATCGATCTCGGCCTTAGCTATGATCTTGGCCTGCCCTCGCATTTCGCCCGCATC
CTGCTGCACGAGTTGCGGCCGCATGCATTGCTGCCGGCAGGCCATGCGCTGGCGGACCACGCCGAGGTCAGCCTGGCGGA
CATGGCCGCCTATCCGCTGATCACGACGGACCAGCCGCACAGCTGGCAGCACATGCTCGATCTGTTCCGCAGCCGTGGCC
TGTCGCCGGTAGCCGACAGGGCGACAAGTTCGTTCGAACTCCAGCGGAGCATGGTGGCGAACGGTTTTGGTGTCGCCATC
AGCTACACCCGCCCGCAAGGCGACCGTAGCTATGATGGACTGCCCTTGATCTGCAAGCCGCTGTCGGATCCGCTGCCGAT
GCAGCGCATCATCCTCACCTATGACACGCACCAACGCGTGTCGAATGCGGCACTGGCATTCGTCGAGACGGCGAAAGCCT
GGTTTTCCACGCGCGACATCTTCGCGTCGTGA

Upstream 100 bases:

>100_bases
GGGAAGCCATGGTGTCCTCCTTTCAGGATCGGGACGACTATCGCAACCCACACTCATGCAGTAAAATAATAACTTCTCAT
CTGACACATAGAACAAGACT

Downstream 100 bases:

>100_bases
CGGGCTGACGGTCGCTGCTCATCCGCTTGCCGCTTGACGGTTTCCGCGGCTGCTGCCACTCCATGGACATGGAACCTATC
CAGTCGAAAGCCGCCCAGGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSPSLTQLRYLVAVARHGSVTGAARTLNISQPSISVAIDAIEKDFGQKLFVRQRGSGVSLTSFGRAVVAKAKQVLAEADE
LMSLSSGNSAVGGELVLGCFEDLAPYFAPGLIRAFSERHPDVAVIVRDETFETLGRRLADAAIDLGLSYDLGLPSHFARI
LLHELRPHALLPAGHALADHAEVSLADMAAYPLITTDQPHSWQHMLDLFRSRGLSPVADRATSSFELQRSMVANGFGVAI
SYTRPQGDRSYDGLPLICKPLSDPLPMQRIILTYDTHQRVSNAALAFVETAKAWFSTRDIFAS

Sequences:

>Translated_303_residues
MSPSLTQLRYLVAVARHGSVTGAARTLNISQPSISVAIDAIEKDFGQKLFVRQRGSGVSLTSFGRAVVAKAKQVLAEADE
LMSLSSGNSAVGGELVLGCFEDLAPYFAPGLIRAFSERHPDVAVIVRDETFETLGRRLADAAIDLGLSYDLGLPSHFARI
LLHELRPHALLPAGHALADHAEVSLADMAAYPLITTDQPHSWQHMLDLFRSRGLSPVADRATSSFELQRSMVANGFGVAI
SYTRPQGDRSYDGLPLICKPLSDPLPMQRIILTYDTHQRVSNAALAFVETAKAWFSTRDIFAS
>Mature_302_residues
SPSLTQLRYLVAVARHGSVTGAARTLNISQPSISVAIDAIEKDFGQKLFVRQRGSGVSLTSFGRAVVAKAKQVLAEADEL
MSLSSGNSAVGGELVLGCFEDLAPYFAPGLIRAFSERHPDVAVIVRDETFETLGRRLADAAIDLGLSYDLGLPSHFARIL
LHELRPHALLPAGHALADHAEVSLADMAAYPLITTDQPHSWQHMLDLFRSRGLSPVADRATSSFELQRSMVANGFGVAIS
YTRPQGDRSYDGLPLICKPLSDPLPMQRIILTYDTHQRVSNAALAFVETAKAWFSTRDIFAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=299, Percent_Identity=29.4314381270903, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI2367136, Length=287, Percent_Identity=26.4808362369338, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787530, Length=241, Percent_Identity=24.4813278008299, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787601, Length=148, Percent_Identity=31.0810810810811, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1789204, Length=266, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789506, Length=305, Percent_Identity=24.2622950819672, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790399, Length=276, Percent_Identity=26.4492753623188, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=151, Percent_Identity=26.4900662251656, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788296, Length=242, Percent_Identity=25.2066115702479, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI157672245, Length=301, Percent_Identity=25.5813953488372, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788297, Length=154, Percent_Identity=24.025974025974, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32856; Mature: 32725

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPSLTQLRYLVAVARHGSVTGAARTLNISQPSISVAIDAIEKDFGQKLFVRQRGSGVSL
CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCHHHHHHCCCCCCCH
TSFGRAVVAKAKQVLAEADELMSLSSGNSAVGGELVLGCFEDLAPYFAPGLIRAFSERHP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DVAVIVRDETFETLGRRLADAAIDLGLSYDLGLPSHFARILLHELRPHALLPAGHALADH
CEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
AEVSLADMAAYPLITTDQPHSWQHMLDLFRSRGLSPVADRATSSFELQRSMVANGFGVAI
HHHHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCCEEEE
SYTRPQGDRSYDGLPLICKPLSDPLPMQRIILTYDTHQRVSNAALAFVETAKAWFSTRDI
EEECCCCCCCCCCCCEEECCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
FAS
HCC
>Mature Secondary Structure 
SPSLTQLRYLVAVARHGSVTGAARTLNISQPSISVAIDAIEKDFGQKLFVRQRGSGVSL
CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCHHHHHHCCCCCCCH
TSFGRAVVAKAKQVLAEADELMSLSSGNSAVGGELVLGCFEDLAPYFAPGLIRAFSERHP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DVAVIVRDETFETLGRRLADAAIDLGLSYDLGLPSHFARILLHELRPHALLPAGHALADH
CEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
AEVSLADMAAYPLITTDQPHSWQHMLDLFRSRGLSPVADRATSSFELQRSMVANGFGVAI
HHHHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCCEEEE
SYTRPQGDRSYDGLPLICKPLSDPLPMQRIILTYDTHQRVSNAALAFVETAKAWFSTRDI
EEECCCCCCCCCCCCEEECCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
FAS
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]