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The map label for this gene is pecT [H]

Identifier: 13476159

GI number: 13476159

Start: 6122236

End: 6123153

Strand: Reverse

Name: pecT [H]

Synonym: mll7406

Alternate gene names: 13476159

Gene position: 6123153-6122236 (Counterclockwise)

Preceding gene: 13476167

Following gene: 13476156

Centisome position: 87.03

GC content: 69.39

Gene sequence:

>918_bases
ATGCAACGCGTCACCTTCGACCTCGATGTTCTCCGCAGTTTCGTCACCGGCATGGAGCTGGGCAGCTTTGCCAAGGCCGC
CGACCGGCTGGGCCGGTCGACCTCGGCGGTGAGCGCGCAATTGAAGAAACTGGAAGATCAGGCGGCCACGCCGATCTTCC
GCAAAGCGGGGCGTGGGCTGGCCTTGACGGAGGCCGGCGAAACCATGCTCGGCTATGCGCGGCGGCTGCTCGAGCTGAAT
GACGAGGCGGCAGCGGCGATCCACGATGTCGAACTGGAAGGCTGGGTGCGGCTCGGCCTGCAGGAGGATTTTGGCGAGGC
GGTGCTGCCGGACGTGCTCGGCCGCTTCGCCCGCGCTCACCCCAAGGTCAAGATCGAGGCCAGGATCGCGCGCAGCCACG
AGCTGGCCGAAAGGGTGATGTCAGGCAGCCTCGACATCGCGCTCGCCTGGCACAGCGGCCAGACGCTGCCCTACAGCGAG
CATGTCGCCGATGTTCCCATGCGCTGGATCGGCCCGGCAAAGCGCATCGAGACCAGCCTGCGCGACGGCGAACCGCTGCC
GCTGGTGGCGCTCGAGGCGCCATGCCTGTTGCGTACGGTGGCGACGGAAACGCTCGACCGCGCCGGGCTGCCCTGGCGCA
TGGCCTTCTCCAGCCCGAGCCTTGGCGGCATCTGGGCGGCTGTCGCGGCGGGGCTGGGGCTGACGATCCGCACCGATATC
GGCCTGCCGGCCAGCGTCAGTGCGATGGCGCCGGAGATTGCCGGGCTACCGGCGCTGCCCAAGATGGCGTTGTTCCTGCA
CCGCCGGGATGCCGAACCCGAGCCAGTGGCAGCCCGCCTCGCCGACATATTGCTGGAGGCGGCGCGGCAGGCCTTGCCGG
GCAATGCGCGGACTGCGGGCTTGCGTGCGGTCGCCTGA

Upstream 100 bases:

>100_bases
CCCAGTCCCCTGGACCTTGACGGCATTTCTCTAGCGCCATAGGTTGATCCTTAAAATCAGGAAGTTTTTGACTATCAATC
CCGAAAAACAGGACGTTTCC

Downstream 100 bases:

>100_bases
TCGGACGAGCACCGAGGCTCAGCCGCGTTTCTTGGCTCGACCGGCGAAAGGATTGTCGGAGGTGCGCAACGCGATGCGGA
TCGGCACGCCCGGCATGTCG

Product: transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MQRVTFDLDVLRSFVTGMELGSFAKAADRLGRSTSAVSAQLKKLEDQAATPIFRKAGRGLALTEAGETMLGYARRLLELN
DEAAAAIHDVELEGWVRLGLQEDFGEAVLPDVLGRFARAHPKVKIEARIARSHELAERVMSGSLDIALAWHSGQTLPYSE
HVADVPMRWIGPAKRIETSLRDGEPLPLVALEAPCLLRTVATETLDRAGLPWRMAFSSPSLGGIWAAVAAGLGLTIRTDI
GLPASVSAMAPEIAGLPALPKMALFLHRRDAEPEPVAARLADILLEAARQALPGNARTAGLRAVA

Sequences:

>Translated_305_residues
MQRVTFDLDVLRSFVTGMELGSFAKAADRLGRSTSAVSAQLKKLEDQAATPIFRKAGRGLALTEAGETMLGYARRLLELN
DEAAAAIHDVELEGWVRLGLQEDFGEAVLPDVLGRFARAHPKVKIEARIARSHELAERVMSGSLDIALAWHSGQTLPYSE
HVADVPMRWIGPAKRIETSLRDGEPLPLVALEAPCLLRTVATETLDRAGLPWRMAFSSPSLGGIWAAVAAGLGLTIRTDI
GLPASVSAMAPEIAGLPALPKMALFLHRRDAEPEPVAARLADILLEAARQALPGNARTAGLRAVA
>Mature_305_residues
MQRVTFDLDVLRSFVTGMELGSFAKAADRLGRSTSAVSAQLKKLEDQAATPIFRKAGRGLALTEAGETMLGYARRLLELN
DEAAAAIHDVELEGWVRLGLQEDFGEAVLPDVLGRFARAHPKVKIEARIARSHELAERVMSGSLDIALAWHSGQTLPYSE
HVADVPMRWIGPAKRIETSLRDGEPLPLVALEAPCLLRTVATETLDRAGLPWRMAFSSPSLGGIWAAVAAGLGLTIRTDI
GLPASVSAMAPEIAGLPALPKMALFLHRRDAEPEPVAARLADILLEAARQALPGNARTAGLRAVA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=269, Percent_Identity=34.5724907063197, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI157672245, Length=275, Percent_Identity=25.0909090909091, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082132, Length=268, Percent_Identity=24.2537313432836, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790208, Length=293, Percent_Identity=25.5972696245734, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787806, Length=142, Percent_Identity=29.5774647887324, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787601, Length=291, Percent_Identity=24.7422680412371, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787879, Length=150, Percent_Identity=32.6666666666667, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48994962, Length=143, Percent_Identity=28.6713286713287, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32681; Mature: 32681

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRVTFDLDVLRSFVTGMELGSFAKAADRLGRSTSAVSAQLKKLEDQAATPIFRKAGRGL
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCE
ALTEAGETMLGYARRLLELNDEAAAAIHDVELEGWVRLGLQEDFGEAVLPDVLGRFARAH
EEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHEECCHHHCCHHHHHHHHHHHHHCC
PKVKIEARIARSHELAERVMSGSLDIALAWHSGQTLPYSEHVADVPMRWIGPAKRIETSL
CCEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHCCHHHCCCHHHHHHHH
RDGEPLPLVALEAPCLLRTVATETLDRAGLPWRMAFSSPSLGGIWAAVAAGLGLTIRTDI
CCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
GLPASVSAMAPEIAGLPALPKMALFLHRRDAEPEPVAARLADILLEAARQALPGNARTAG
CCCCCHHHHCHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
LRAVA
CEECC
>Mature Secondary Structure
MQRVTFDLDVLRSFVTGMELGSFAKAADRLGRSTSAVSAQLKKLEDQAATPIFRKAGRGL
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCE
ALTEAGETMLGYARRLLELNDEAAAAIHDVELEGWVRLGLQEDFGEAVLPDVLGRFARAH
EEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHEECCHHHCCHHHHHHHHHHHHHCC
PKVKIEARIARSHELAERVMSGSLDIALAWHSGQTLPYSEHVADVPMRWIGPAKRIETSL
CCEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHCCHHHCCCHHHHHHHH
RDGEPLPLVALEAPCLLRTVATETLDRAGLPWRMAFSSPSLGGIWAAVAAGLGLTIRTDI
CCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
GLPASVSAMAPEIAGLPALPKMALFLHRRDAEPEPVAARLADILLEAARQALPGNARTAG
CCCCCHHHHCHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
LRAVA
CEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]