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The map label for this gene is soxD [H]

Identifier: 13476084

GI number: 13476084

Start: 6045616

End: 6045891

Strand: Reverse

Name: soxD [H]

Synonym: msl7305

Alternate gene names: 13476084

Gene position: 6045891-6045616 (Counterclockwise)

Preceding gene: 13476085

Following gene: 13476083

Centisome position: 85.93

GC content: 64.86

Gene sequence:

>276_bases
ATGCGCATTGTCTGTCCCTTCTGCGGCGAACGCGAACTTGGCGAGTTCACCTATCTCGGCGACGCCAAACCGGTGCGACC
CGCCGCGGATGCCGGCGAAGAAGCCGTCTACGACTATGTCTATCTGCGCGACAATGTCGCCGGCGTGATGAGCGAGAACT
GGTATCACGGCGGCGGCTGCCGGGCGTGGCTGAAGGTCACCCGCAACACGCTGACGCATGAGATTTCGGCGATCGAACCG
GCTGCGGGCGCCGGTGCGGCGAAGGTTGGCGCGTGA

Upstream 100 bases:

>100_bases
GCTGCACGGTTCCGCCTCGACCGCTTCCGGACTGGCGCCATGATCGACGAAAAGGGCCAGGGCGCCCAACCGAACCTGCA
CTGAGGACGGCCAGAAAATC

Downstream 100 bases:

>100_bases
TGGCCGGCGCGCAGACAAACCGGCTCGACAAGGGCGGCCTCGTCGACCGCTCGGCGCCGCTGAATTTCCGCTTCGACGGC
AAGAGCTTTTCCGGCTTCGA

Product: sarcosine oxidase delta subunit

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MRIVCPFCGERELGEFTYLGDAKPVRPAADAGEEAVYDYVYLRDNVAGVMSENWYHGGGCRAWLKVTRNTLTHEISAIEP
AAGAGAAKVGA

Sequences:

>Translated_91_residues
MRIVCPFCGERELGEFTYLGDAKPVRPAADAGEEAVYDYVYLRDNVAGVMSENWYHGGGCRAWLKVTRNTLTHEISAIEP
AAGAGAAKVGA
>Mature_91_residues
MRIVCPFCGERELGEFTYLGDAKPVRPAADAGEEAVYDYVYLRDNVAGVMSENWYHGGGCRAWLKVTRNTLTHEISAIEP
AAGAGAAKVGA

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 9792; Mature: 9792

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVCPFCGERELGEFTYLGDAKPVRPAADAGEEAVYDYVYLRDNVAGVMSENWYHGGGC
CEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHEEEEEECCCCCCCCCCCCCCCCCH
RAWLKVTRNTLTHEISAIEPAAGAGAAKVGA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRIVCPFCGERELGEFTYLGDAKPVRPAADAGEEAVYDYVYLRDNVAGVMSENWYHGGGC
CEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHEEEEEECCCCCCCCCCCCCCCCCH
RAWLKVTRNTLTHEISAIEPAAGAGAAKVGA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]