Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 13476071

GI number: 13476071

Start: 6023439

End: 6024434

Strand: Direct

Name: rbsC [H]

Synonym: mlr7287

Alternate gene names: 13476071

Gene position: 6023439-6024434 (Clockwise)

Preceding gene: 13476070

Following gene: 13476072

Centisome position: 85.61

GC content: 63.55

Gene sequence:

>996_bases
ATGACGCTGCGCGACCACACCATACGCTATGGGTTCATCGTCCTGCTGTTCGGGCTCGTCGCCTATTTCGCGATCGCCGC
CGATGGGTTCGTCTCGCCGCAAAGTGCCGTCTTCATCTTCCAGTCGGTCGCCATCACCGGCGTGCTGGCGCTCGGCGTCA
CCGCCACGCTGGTCGTCGGCGGCTTCGACCTGTCGATCGGCTCGGTCGCCACGTCGGCCATGATGGCGGCTGCCTATGTG
ATGGTGGTGCTGGAGCAGAACGCCGTCGTGGCGGTCGTTGTCTGCCTGCTCATCGGCGCCATTGTCGGCCTGATCAATGG
CTGGCTGATCGTCTATATGCGCGTGCCCGATCTCTTGGCGACGCTCGGCATGATGTTCCTGCTGGTCGGCCTGCAGCGCA
TCCCGACCGAAGGCCGCTCGATCGCCACCGGCATGACCATGCCCGACGGTTCGGTCGCCAATGGCAAGTTCGGCGGCGCC
TTCCTGGCGCTCGGCCGCCACCGTTTCGACTTCTTCATCCCGAACCTCATTCCGGTGTCGGTCGTCGTGCTGCTGGTGCT
GGCCGTGCTGATCTGGTTCTTCCTCGAATACACCCGCTTCGGCCGTATGATGTATGCGGTCGGCTCCAATGAGCGCGCCG
CCGAACTCGCCGGTGCGCCTGTCAAGGCATACAAGATCTGGGCCTACGTTATTTCAGGAGTTTTTGCCTCGATCGGCGGC
ATTTTGCTCGCCGCCCGGCTTGGACGCGGCGACATCGCCTCGGGTAATAATCTGCTGCTCGATGCAGTTGCCGCGGCGCT
GATCGGCTACGCGGTGTTGGGTGCCGCCAAGCCGAACGCCTTCGGCACCGCAGTCGGCGCGCTGTTCGTCGGCATCTTGC
TGCAAGGCCTGACGATGATGAACGCGCCTTACTACACGCAGGATTTCGTCAAGGGCGTGGTTCTGGTCGTCGCCCTTGTC
TTCACCTTTGCCCTTTCGGGCAGGGGCAGGGGGTAG

Upstream 100 bases:

>100_bases
GCTGCACAGCGCCGCCTGAGCGTGGCGGCCGGTAGAATTGGAATGGAGAGACCATGGGTCCGAGTTGGATAGGAATGGCT
GCGTCGCGCGGGTGCGCTGA

Downstream 100 bases:

>100_bases
TCTCGACCGGACAGGATTTTGGGTTCAACAAGAGTGGAGGAAAACAAGGTGAACATCACGAGAAGACTTCTGGGGAAGGT
GGCGCTCGGGCTGGCCGGCG

Product: ABC transporter, permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MTLRDHTIRYGFIVLLFGLVAYFAIAADGFVSPQSAVFIFQSVAITGVLALGVTATLVVGGFDLSIGSVATSAMMAAAYV
MVVLEQNAVVAVVVCLLIGAIVGLINGWLIVYMRVPDLLATLGMMFLLVGLQRIPTEGRSIATGMTMPDGSVANGKFGGA
FLALGRHRFDFFIPNLIPVSVVVLLVLAVLIWFFLEYTRFGRMMYAVGSNERAAELAGAPVKAYKIWAYVISGVFASIGG
ILLAARLGRGDIASGNNLLLDAVAAALIGYAVLGAAKPNAFGTAVGALFVGILLQGLTMMNAPYYTQDFVKGVVLVVALV
FTFALSGRGRG

Sequences:

>Translated_331_residues
MTLRDHTIRYGFIVLLFGLVAYFAIAADGFVSPQSAVFIFQSVAITGVLALGVTATLVVGGFDLSIGSVATSAMMAAAYV
MVVLEQNAVVAVVVCLLIGAIVGLINGWLIVYMRVPDLLATLGMMFLLVGLQRIPTEGRSIATGMTMPDGSVANGKFGGA
FLALGRHRFDFFIPNLIPVSVVVLLVLAVLIWFFLEYTRFGRMMYAVGSNERAAELAGAPVKAYKIWAYVISGVFASIGG
ILLAARLGRGDIASGNNLLLDAVAAALIGYAVLGAAKPNAFGTAVGALFVGILLQGLTMMNAPYYTQDFVKGVVLVVALV
FTFALSGRGRG
>Mature_330_residues
TLRDHTIRYGFIVLLFGLVAYFAIAADGFVSPQSAVFIFQSVAITGVLALGVTATLVVGGFDLSIGSVATSAMMAAAYVM
VVLEQNAVVAVVVCLLIGAIVGLINGWLIVYMRVPDLLATLGMMFLLVGLQRIPTEGRSIATGMTMPDGSVANGKFGGAF
LALGRHRFDFFIPNLIPVSVVVLLVLAVLIWFFLEYTRFGRMMYAVGSNERAAELAGAPVKAYKIWAYVISGVFASIGGI
LLAARLGRGDIASGNNLLLDAVAAALIGYAVLGAAKPNAFGTAVGALFVGILLQGLTMMNAPYYTQDFVKGVVLVVALVF
TFALSGRGRG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=309, Percent_Identity=33.6569579288026, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788896, Length=327, Percent_Identity=29.3577981651376, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1789992, Length=368, Percent_Identity=27.7173913043478, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI145693152, Length=325, Percent_Identity=30.4615384615385, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790524, Length=314, Percent_Identity=27.0700636942675, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788471, Length=286, Percent_Identity=30.4195804195804, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787793, Length=294, Percent_Identity=28.9115646258503, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787794, Length=325, Percent_Identity=30.4615384615385, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082395, Length=271, Percent_Identity=29.8892988929889, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI145693214, Length=277, Percent_Identity=30.3249097472924, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34720; Mature: 34589

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRDHTIRYGFIVLLFGLVAYFAIAADGFVSPQSAVFIFQSVAITGVLALGVTATLVVG
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GFDLSIGSVATSAMMAAAYVMVVLEQNAVVAVVVCLLIGAIVGLINGWLIVYMRVPDLLA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHH
TLGMMFLLVGLQRIPTEGRSIATGMTMPDGSVANGKFGGAFLALGRHRFDFFIPNLIPVS
HHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
VVVLLVLAVLIWFFLEYTRFGRMMYAVGSNERAAELAGAPVKAYKIWAYVISGVFASIGG
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ILLAARLGRGDIASGNNLLLDAVAAALIGYAVLGAAKPNAFGTAVGALFVGILLQGLTMM
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
NAPYYTQDFVKGVVLVVALVFTFALSGRGRG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TLRDHTIRYGFIVLLFGLVAYFAIAADGFVSPQSAVFIFQSVAITGVLALGVTATLVVG
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GFDLSIGSVATSAMMAAAYVMVVLEQNAVVAVVVCLLIGAIVGLINGWLIVYMRVPDLLA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHH
TLGMMFLLVGLQRIPTEGRSIATGMTMPDGSVANGKFGGAFLALGRHRFDFFIPNLIPVS
HHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
VVVLLVLAVLIWFFLEYTRFGRMMYAVGSNERAAELAGAPVKAYKIWAYVISGVFASIGG
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ILLAARLGRGDIASGNNLLLDAVAAALIGYAVLGAAKPNAFGTAVGALFVGILLQGLTMM
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
NAPYYTQDFVKGVVLVVALVFTFALSGRGRG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]