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The map label for this gene is araQ [H]

Identifier: 13476009

GI number: 13476009

Start: 5955824

End: 5956579

Strand: Reverse

Name: araQ [H]

Synonym: mll7213

Alternate gene names: 13476009

Gene position: 5956579-5955824 (Counterclockwise)

Preceding gene: 13476010

Following gene: 13476002

Centisome position: 84.66

GC content: 62.04

Gene sequence:

>756_bases
GTGTGGATGGTGCTGTCGAGCCTGAAAACCCCGGCCGAGAGCATGCAGGTGCCGCCGGTGTGGATACCGCACACACCGAG
CCTCGACGCCTATGAAAAAGTTTCCGGCGTGGTCAATGTCGGCCGCTCGATGTGGAATTCCCTGGTCATCGCCTCAATCA
CCACCGCCGGCATCCTGATCACCAGCATGATGGCCGGCTATGCCTTCGCCAAATACCACTTCCCCGCCAAATCGCTGCTG
TTTTCGCTGCTGATCGCCACCATGTTCCTGCCGCCGATCGTGACGCTGATCCCGCTTTATCGCCTCGTCGGTTCGACCGG
CCTCAATGCCAGCCTGGCCGGCATCATCGTGCCCAATCTCGCCAATGCCTTCGGCATCTTCCTGATGCGCCAGTTCATTG
CAGGCGTGCCCGACGATTTGATCGACGCCGCGCGCATGGACGGCGCCTCCGAACTCTTGATCCTGTTCAAGATCGTGGCG
CCAAGCGTCGCACCGGCCATCGCGGCGCTGGCGCTGTTCGCTTTCGTCTACCATTGGAACAGCTATCTCTGGCCGCTGAC
CGTGCTGCAAGGCAATGCCGAGGCCTATCCGATCGTCATCAGCCTCAGCCGCCTGCTCAGCTACAACAGGGGCGCGGTCA
ACACCGGGCTGGTGATGGCCGGCGCGACGCTGGCCGTACTGCCGCCGCTCATTCTGTTCGTCCTGCTGCAGCGCTTCTTC
GTCGATTCCATCGTCGGCTCGGCCGTCAAAGGATAG

Upstream 100 bases:

>100_bases
TGACAGAGGTTCTCGACATCTTCGCCAGCGCAACCGGCTGATCGGCCGGGCTTCATTATCAGACCGGCGCCCAGTCGCCG
TCGCCTCGGCCTTCCCGCTG

Downstream 100 bases:

>100_bases
CTGCTTCAGTACGGCAGGCCGACATAGTTCTCGGCGAGCGCGGTCGATGCCGCCTGCGAGTGCACGAGATAGTCGAGTTC
GGCTTCCTGGATGCGCTGGC

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MWMVLSSLKTPAESMQVPPVWIPHTPSLDAYEKVSGVVNVGRSMWNSLVIASITTAGILITSMMAGYAFAKYHFPAKSLL
FSLLIATMFLPPIVTLIPLYRLVGSTGLNASLAGIIVPNLANAFGIFLMRQFIAGVPDDLIDAARMDGASELLILFKIVA
PSVAPAIAALALFAFVYHWNSYLWPLTVLQGNAEAYPIVISLSRLLSYNRGAVNTGLVMAGATLAVLPPLILFVLLQRFF
VDSIVGSAVKG

Sequences:

>Translated_251_residues
MWMVLSSLKTPAESMQVPPVWIPHTPSLDAYEKVSGVVNVGRSMWNSLVIASITTAGILITSMMAGYAFAKYHFPAKSLL
FSLLIATMFLPPIVTLIPLYRLVGSTGLNASLAGIIVPNLANAFGIFLMRQFIAGVPDDLIDAARMDGASELLILFKIVA
PSVAPAIAALALFAFVYHWNSYLWPLTVLQGNAEAYPIVISLSRLLSYNRGAVNTGLVMAGATLAVLPPLILFVLLQRFF
VDSIVGSAVKG
>Mature_251_residues
MWMVLSSLKTPAESMQVPPVWIPHTPSLDAYEKVSGVVNVGRSMWNSLVIASITTAGILITSMMAGYAFAKYHFPAKSLL
FSLLIATMFLPPIVTLIPLYRLVGSTGLNASLAGIIVPNLANAFGIFLMRQFIAGVPDDLIDAARMDGASELLILFKIVA
PSVAPAIAALALFAFVYHWNSYLWPLTVLQGNAEAYPIVISLSRLLSYNRGAVNTGLVMAGATLAVLPPLILFVLLQRFF
VDSIVGSAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=206, Percent_Identity=33.0097087378641, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1787571, Length=256, Percent_Identity=21.875, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790464, Length=218, Percent_Identity=28.4403669724771, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26924; Mature: 26924

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]