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The map label for this gene is ygbK [C]

Identifier: 13475835

GI number: 13475835

Start: 5769447

End: 5770763

Strand: Reverse

Name: ygbK [C]

Synonym: mll7005

Alternate gene names: 13475835

Gene position: 5770763-5769447 (Counterclockwise)

Preceding gene: 13475836

Following gene: 13475827

Centisome position: 82.02

GC content: 64.39

Gene sequence:

>1317_bases
ATGCTTAGCTACTATGGCGACGACCTCACTGGCTCGACCGACGTCATGGAAGCGCTCGAGCTTGGCGGCGTGCCGACCGT
GCTGTTCATGCGTCAACCCGACCAGCAGCTGCTAGCGCGGTTTGCGCATTGCCGCGCCGTGGGACTGGCTGGCACGAGCC
GCAGCGAGACGCCGCAATGGATGGACGAAAATCTGGCGCCTGCCTTTAGATGGCTAAGAAGCCTCAAAGCGACGGTTTGC
CATTACAAGATCTGCTCGACCTTCGATTCCAGCCCGGCAATCGGCAGCATTGGCCGCGCCATCGAGATCGGCCGGCGCGT
CTTCGACCAGAAGAGCGTGCCGGTGGTTGTCGGGGCGCCTCAGCTCAAACGCTACACGGCATTTGGCAACCTCTTCGCGG
CGTTTCGCGGCACCTATTTCCGTATCGACCGGCATCCGGTCATGAGCCGGCATCCGGTGACACCTATGAAGGAGGCTGAT
CTCCTCATCCACCTCCATCGCCAGACCGATCTCGGTTCTGGCCTTGTCGACCTGGCAGCGCTGCAGGCGAATGACCTTTC
CCAGACGGTCGACCAGGCCTTGCAGGACAAGGAAATCGTCCTGTTCGACGTCGAAAGCCACCAGACGCAGAGGCGCGTCG
GCGAACAGATCTGGCGGATTTGCGAACAAGGCAATGGTTTCGTCGTCGGATCCTCGGGCGTCGAATATGCGCTGCTCGCC
GAATGGGCCGGCAAAGGCATCGCCGCGGGGCACGCGTCCTTCGCGCCGCCCGGTCCGGTGGACCGGCTCGCGGTGGTCTC
GGGCAGTGTGTCGCCGACCACCGAGAAGCAGATCCGCTTCGCGCTCGCCCATGGGTTCGACGGCGTCCAGATCGATACCA
TGCAGCTGGTTTCGGACAGCGCCGGCGAGGCAATCGAACGTGCCGTAGCGAGCGGCCTGGCGAGTCTCACGGCAGGGCGC
AGCGTCATCCTCTACACCGCCCTTGGTCCCCAGGCCGATCGCAGTGCCGAGATCGAGCATATTGAAGGTGCGCGAAACCG
GCTCGGCCGGGCGCTCGGCGACATTCTGCGCCGGCTGGTCGTCGACCAGAAACTCCGGCGCGCGGTCATCGCCGGCGGAG
ACACCTCCAGCCATGCGCTGGGACAATTGTCCATCGACGCACTGACCGTGCGCATGCCACTGCCGCAATCACCGGGTTCG
CCGCTCTGCCTTGCCCATGGCGGCGGCGAGGTCGACGGCCTCGAAATCGCGCTGAAGGGCGGCCAGGTCGGAACCGATCG
CTATTTTGGCGCCATTCGCGACGGCCTCGGAGATTGA

Upstream 100 bases:

>100_bases
TCCCGCTGGCGAAATATGCCCGCAGCCATGCCGAGCTCGCGCGCTCGATCGAAAAGTTCGGCGACGGCAAGGCGGCGTGA
GCGAAGTGATGCAGAACCTG

Downstream 100 bases:

>100_bases
CGGGATTGCCTAGCGGCAAATAACGCCACTGCGGCTCGCGCCGTTCCGGGGCAAAAGACGGGAAAACGCCGTGTGGTCAG
CGCCGCGATGTCGCGCACGC

Product: hypothetical protein

Products: NA

Alternate protein names: Type III Effector Hrp-Dependent Protein; Type III Effector Hrp-Dependent Outer Protein; Type III Effector Hrp-Dependent Outer; YgbK Domain Protein; Type III Effector Hrp-Dependent Outer Domain Protein; YgbK Domain-Containing Protein; Paral TRNA Synthase; tRNA Synthase; Type III Effector Hrp-Dependent Outer Proteins; Type III Effector Hrp-Dependent Outers Domain Protein; Type III Effector Hop Protein; 4-Hydroxy-3-Methylbut-2-Enyl Diphosphate Reductase; HopAN1 Protein; 4-Hydroxythreonine-4-Phosphate Dehydrogenase; Type III Effector HopAN1 Protein

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MLSYYGDDLTGSTDVMEALELGGVPTVLFMRQPDQQLLARFAHCRAVGLAGTSRSETPQWMDENLAPAFRWLRSLKATVC
HYKICSTFDSSPAIGSIGRAIEIGRRVFDQKSVPVVVGAPQLKRYTAFGNLFAAFRGTYFRIDRHPVMSRHPVTPMKEAD
LLIHLHRQTDLGSGLVDLAALQANDLSQTVDQALQDKEIVLFDVESHQTQRRVGEQIWRICEQGNGFVVGSSGVEYALLA
EWAGKGIAAGHASFAPPGPVDRLAVVSGSVSPTTEKQIRFALAHGFDGVQIDTMQLVSDSAGEAIERAVASGLASLTAGR
SVILYTALGPQADRSAEIEHIEGARNRLGRALGDILRRLVVDQKLRRAVIAGGDTSSHALGQLSIDALTVRMPLPQSPGS
PLCLAHGGGEVDGLEIALKGGQVGTDRYFGAIRDGLGD

Sequences:

>Translated_438_residues
MLSYYGDDLTGSTDVMEALELGGVPTVLFMRQPDQQLLARFAHCRAVGLAGTSRSETPQWMDENLAPAFRWLRSLKATVC
HYKICSTFDSSPAIGSIGRAIEIGRRVFDQKSVPVVVGAPQLKRYTAFGNLFAAFRGTYFRIDRHPVMSRHPVTPMKEAD
LLIHLHRQTDLGSGLVDLAALQANDLSQTVDQALQDKEIVLFDVESHQTQRRVGEQIWRICEQGNGFVVGSSGVEYALLA
EWAGKGIAAGHASFAPPGPVDRLAVVSGSVSPTTEKQIRFALAHGFDGVQIDTMQLVSDSAGEAIERAVASGLASLTAGR
SVILYTALGPQADRSAEIEHIEGARNRLGRALGDILRRLVVDQKLRRAVIAGGDTSSHALGQLSIDALTVRMPLPQSPGS
PLCLAHGGGEVDGLEIALKGGQVGTDRYFGAIRDGLGD
>Mature_438_residues
MLSYYGDDLTGSTDVMEALELGGVPTVLFMRQPDQQLLARFAHCRAVGLAGTSRSETPQWMDENLAPAFRWLRSLKATVC
HYKICSTFDSSPAIGSIGRAIEIGRRVFDQKSVPVVVGAPQLKRYTAFGNLFAAFRGTYFRIDRHPVMSRHPVTPMKEAD
LLIHLHRQTDLGSGLVDLAALQANDLSQTVDQALQDKEIVLFDVESHQTQRRVGEQIWRICEQGNGFVVGSSGVEYALLA
EWAGKGIAAGHASFAPPGPVDRLAVVSGSVSPTTEKQIRFALAHGFDGVQIDTMQLVSDSAGEAIERAVASGLASLTAGR
SVILYTALGPQADRSAEIEHIEGARNRLGRALGDILRRLVVDQKLRRAVIAGGDTSSHALGQLSIDALTVRMPLPQSPGS
PLCLAHGGGEVDGLEIALKGGQVGTDRYFGAIRDGLGD

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47001; Mature: 47001

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSYYGDDLTGSTDVMEALELGGVPTVLFMRQPDQQLLARFAHCRAVGLAGTSRSETPQW
CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHEECCCCCCCCCCHH
MDENLAPAFRWLRSLKATVCHYKICSTFDSSPAIGSIGRAIEIGRRVFDQKSVPVVVGAP
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCC
QLKRYTAFGNLFAAFRGTYFRIDRHPVMSRHPVTPMKEADLLIHLHRQTDLGSGLVDLAA
HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHH
LQANDLSQTVDQALQDKEIVLFDVESHQTQRRVGEQIWRICEQGNGFVVGSSGVEYALLA
HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEHHH
EWAGKGIAAGHASFAPPGPVDRLAVVSGSVSPTTEKQIRFALAHGFDGVQIDTMQLVSDS
HHCCCCEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHCC
AGEAIERAVASGLASLTAGRSVILYTALGPQADRSAEIEHIEGARNRLGRALGDILRRLV
HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VDQKLRRAVIAGGDTSSHALGQLSIDALTVRMPLPQSPGSPLCLAHGGGEVDGLEIALKG
HHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCCCCEEEEEEC
GQVGTDRYFGAIRDGLGD
CCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MLSYYGDDLTGSTDVMEALELGGVPTVLFMRQPDQQLLARFAHCRAVGLAGTSRSETPQW
CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHEECCCCCCCCCCHH
MDENLAPAFRWLRSLKATVCHYKICSTFDSSPAIGSIGRAIEIGRRVFDQKSVPVVVGAP
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCC
QLKRYTAFGNLFAAFRGTYFRIDRHPVMSRHPVTPMKEADLLIHLHRQTDLGSGLVDLAA
HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHH
LQANDLSQTVDQALQDKEIVLFDVESHQTQRRVGEQIWRICEQGNGFVVGSSGVEYALLA
HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEHHH
EWAGKGIAAGHASFAPPGPVDRLAVVSGSVSPTTEKQIRFALAHGFDGVQIDTMQLVSDS
HHCCCCEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHCC
AGEAIERAVASGLASLTAGRSVILYTALGPQADRSAEIEHIEGARNRLGRALGDILRRLV
HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VDQKLRRAVIAGGDTSSHALGQLSIDALTVRMPLPQSPGSPLCLAHGGGEVDGLEIALKG
HHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCCCCEEEEEEC
GQVGTDRYFGAIRDGLGD
CCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA