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The map label for this gene is ycaN [H]

Identifier: 13475773

GI number: 13475773

Start: 5702156

End: 5703064

Strand: Reverse

Name: ycaN [H]

Synonym: mll6935

Alternate gene names: 13475773

Gene position: 5703064-5702156 (Counterclockwise)

Preceding gene: 13475776

Following gene: 13475766

Centisome position: 81.05

GC content: 67.99

Gene sequence:

>909_bases
ATGAAGCAGAACTACACAATCCGGCACGGGGCGCTGGAGGGCGTCGAGGTGTTCCTGGCTGTCGCCAGACACCGCAACTT
CCGCCGCGCCGCCGCCGATCTCGGGGTGACGCCGTCGGCCGTGAGCCAGGCGGTGCGTGCGCTGGAAGCCCGCATCGGCG
CGGCGCTGTTTGTCCGCACGACGCGCAGTGTCGGCCTGACCGAGGCCGGTCAGCGCTTCCTCGACCGTGCCGGCCCTGGC
TTCGAGGAGATCGTCGCCGCAGGCGAGGCCGCGCGTGACATAGGCCAGCGACCGACCGGCCTGCTACGCCTGTCGGTGCC
GCGCGCCGTCGTGCCGTTAATCCTTGAGCCGGTGATTGCGTCGTTCTGCCAGGCCTATCCCGAAGTCGAACTGGAGATCG
CCGCGAGCGACGAGATGGTCGATCTGGCGACCGGCGGGTTCGATGCCGGCATCCGCCTCGGCCAGTTCATTGCCACCGAC
ATGGTGGCGGTGCGGCTGACCCCGTCCTTCCGGTTCGTGGTCGTCGGCAGTCCCGACTATCTCGATCGCCATGGCCGCCC
TGAGCGTATCGACGATTTGCGCAACCACGCCTGCCTGCGCCTGCGCCGTTCGAACGGCGCCATCGCGCCATGGACGTTCG
TCGACGGCAACGAGGCGATCGAGGCCATGGTCTCAGGCCCGCTGATCGCGCACGACTATCCGACGTTGCTCGGGGCCGCG
ATGCGGGGGATTGGGCTGGCGCAGATCCCACGACCGGTCGCCGAGGGTCCGATAGAACAGGGAAAACTCGAACCCGTGCT
GGACACCATCGCGGCGACGACGCCGGGCGTCTTCCTCTATCACCCCGGCAAGCGCCAGATCCTGCCGAAGCTGCGCGCCT
TCATCGACCACCTCAAATCCGCGATCTGA

Upstream 100 bases:

>100_bases
ACTCCATCAAGTTCATCGGTCATGGCAAGATGCTCCTGTCTCAAGCTCTTACCTAAACCCGCTTCCATCGTTCGACTATC
CGCTGTAATAACAACAACCC

Downstream 100 bases:

>100_bases
GGGGTGCCGCCGCCTTGGCGCTTCCCCGGCTACGCCGTCTTCTGCGCCACCAGCCCAGCTCTTCCACCATCGCCTGATGC
ATCAGGAACTTCTGCGACTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MKQNYTIRHGALEGVEVFLAVARHRNFRRAAADLGVTPSAVSQAVRALEARIGAALFVRTTRSVGLTEAGQRFLDRAGPG
FEEIVAAGEAARDIGQRPTGLLRLSVPRAVVPLILEPVIASFCQAYPEVELEIAASDEMVDLATGGFDAGIRLGQFIATD
MVAVRLTPSFRFVVVGSPDYLDRHGRPERIDDLRNHACLRLRRSNGAIAPWTFVDGNEAIEAMVSGPLIAHDYPTLLGAA
MRGIGLAQIPRPVAEGPIEQGKLEPVLDTIAATTPGVFLYHPGKRQILPKLRAFIDHLKSAI

Sequences:

>Translated_302_residues
MKQNYTIRHGALEGVEVFLAVARHRNFRRAAADLGVTPSAVSQAVRALEARIGAALFVRTTRSVGLTEAGQRFLDRAGPG
FEEIVAAGEAARDIGQRPTGLLRLSVPRAVVPLILEPVIASFCQAYPEVELEIAASDEMVDLATGGFDAGIRLGQFIATD
MVAVRLTPSFRFVVVGSPDYLDRHGRPERIDDLRNHACLRLRRSNGAIAPWTFVDGNEAIEAMVSGPLIAHDYPTLLGAA
MRGIGLAQIPRPVAEGPIEQGKLEPVLDTIAATTPGVFLYHPGKRQILPKLRAFIDHLKSAI
>Mature_302_residues
MKQNYTIRHGALEGVEVFLAVARHRNFRRAAADLGVTPSAVSQAVRALEARIGAALFVRTTRSVGLTEAGQRFLDRAGPG
FEEIVAAGEAARDIGQRPTGLLRLSVPRAVVPLILEPVIASFCQAYPEVELEIAASDEMVDLATGGFDAGIRLGQFIATD
MVAVRLTPSFRFVVVGSPDYLDRHGRPERIDDLRNHACLRLRRSNGAIAPWTFVDGNEAIEAMVSGPLIAHDYPTLLGAA
MRGIGLAQIPRPVAEGPIEQGKLEPVLDTIAATTPGVFLYHPGKRQILPKLRAFIDHLKSAI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=34.5070422535211, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=35.3356890459364, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=32.2033898305085, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=29.553264604811, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87081978, Length=236, Percent_Identity=29.6610169491525, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=26.8292682926829, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=27.3037542662116, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789173, Length=284, Percent_Identity=29.5774647887324, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788706, Length=309, Percent_Identity=26.2135922330097, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI157672245, Length=164, Percent_Identity=32.9268292682927, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786448, Length=293, Percent_Identity=25.5972696245734, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790399, Length=140, Percent_Identity=31.4285714285714, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787879, Length=153, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=154, Percent_Identity=29.2207792207792, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32607; Mature: 32607

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQNYTIRHGALEGVEVFLAVARHRNFRRAAADLGVTPSAVSQAVRALEARIGAALFVRT
CCCCCEEECCCHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEE
TRSVGLTEAGQRFLDRAGPGFEEIVAAGEAARDIGQRPTGLLRLSVPRAVVPLILEPVIA
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH
SFCQAYPEVELEIAASDEMVDLATGGFDAGIRLGQFIATDMVAVRLTPSFRFVVVGSPDY
HHHHHCCCEEEEEECCCCEEEHCCCCCHHHHHHHHHHHHHEEEEEECCCEEEEEECCCHH
LDRHGRPERIDDLRNHACLRLRRSNGAIAPWTFVDGNEAIEAMVSGPLIAHDYPTLLGAA
HHCCCCCHHHHHHHHHHHEEEECCCCCCCCEEEECCHHHHHHHHCCCEEECCHHHHHHHH
MRGIGLAQIPRPVAEGPIEQGKLEPVLDTIAATTPGVFLYHPGKRQILPKLRAFIDHLKS
HHCCCHHHCCCHHHCCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHH
AI
CC
>Mature Secondary Structure
MKQNYTIRHGALEGVEVFLAVARHRNFRRAAADLGVTPSAVSQAVRALEARIGAALFVRT
CCCCCEEECCCHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEE
TRSVGLTEAGQRFLDRAGPGFEEIVAAGEAARDIGQRPTGLLRLSVPRAVVPLILEPVIA
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH
SFCQAYPEVELEIAASDEMVDLATGGFDAGIRLGQFIATDMVAVRLTPSFRFVVVGSPDY
HHHHHCCCEEEEEECCCCEEEHCCCCCHHHHHHHHHHHHHEEEEEECCCEEEEEECCCHH
LDRHGRPERIDDLRNHACLRLRRSNGAIAPWTFVDGNEAIEAMVSGPLIAHDYPTLLGAA
HHCCCCCHHHHHHHHHHHEEEECCCCCCCCEEEECCHHHHHHHHCCCEEECCHHHHHHHH
MRGIGLAQIPRPVAEGPIEQGKLEPVLDTIAATTPGVFLYHPGKRQILPKLRAFIDHLKS
HHCCCHHHCCCHHHCCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHH
AI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]