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The map label for this gene is cyoD [H]

Identifier: 13475709

GI number: 13475709

Start: 5639550

End: 5639927

Strand: Direct

Name: cyoD [H]

Synonym: mlr6849

Alternate gene names: 13475709

Gene position: 5639550-5639927 (Clockwise)

Preceding gene: 13475708

Following gene: 13475710

Centisome position: 80.15

GC content: 60.05

Gene sequence:

>378_bases
ATGAGCGCTCCTGATCACGCCGAAGGCCATGGCCACGCCCATGGCGGCGCCGCGCATGGATCGTTCAAGGGCTATCTGAT
CGGCTTCGTCCTGTCGGTGATCCTGACCGCCATCCCGTTCTGGCTTGTCATGAGCGGTGCCATCGACAACAAGCAGGCCA
CGGCCATCGTCATCATGGCCTTCGCGGTGGTGCAGATCGTCGTCCACATGGTCTTCTTCCTGCATATGAAGACCGCCTCG
GAAGGCGGATGGTCGATGCTGGCGCTGATCTTCACGCTGATCCTGGTCGTGATCGTGCTGACTGGCTCGCTCTGGGTGAT
GTACCACCTCAATGCCAACATGATGCCGGGGCTTCACGATATGCGCGAGATGCCATGA

Upstream 100 bases:

>100_bases
CCAATCGCCGCCGGGTGATGTGCCTCTCGATGTTCTGGCATTTCCTCGACGTCGTCTGGATCGGCGTCTTCACCTTCGTC
TACCTGATGGGGATGTTGCG

Downstream 100 bases:

>100_bases
GCCCGGCGCCGGGCGCGGGGAGAACCACTGCCGAAGCACGGATCGGGCAGGCGGACATCAGCTTGCCCGCCGTGCCAGGA
AAGGGCGCCGGCAGATCGGC

Product: cytochrome o ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MSAPDHAEGHGHAHGGAAHGSFKGYLIGFVLSVILTAIPFWLVMSGAIDNKQATAIVIMAFAVVQIVVHMVFFLHMKTAS
EGGWSMLALIFTLILVVIVLTGSLWVMYHLNANMMPGLHDMREMP

Sequences:

>Translated_125_residues
MSAPDHAEGHGHAHGGAAHGSFKGYLIGFVLSVILTAIPFWLVMSGAIDNKQATAIVIMAFAVVQIVVHMVFFLHMKTAS
EGGWSMLALIFTLILVVIVLTGSLWVMYHLNANMMPGLHDMREMP
>Mature_124_residues
SAPDHAEGHGHAHGGAAHGSFKGYLIGFVLSVILTAIPFWLVMSGAIDNKQATAIVIMAFAVVQIVVHMVFFLHMKTASE
GGWSMLALIFTLILVVIVLTGSLWVMYHLNANMMPGLHDMREMP

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=110, Percent_Identity=50.9090909090909, Blast_Score=115, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 13557; Mature: 13426

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
8.8 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
8.1 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPDHAEGHGHAHGGAAHGSFKGYLIGFVLSVILTAIPFWLVMSGAIDNKQATAIVIMA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
FAVVQIVVHMVFFLHMKTASEGGWSMLALIFTLILVVIVLTGSLWVMYHLNANMMPGLHD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCHHH
MREMP
HHCCC
>Mature Secondary Structure 
SAPDHAEGHGHAHGGAAHGSFKGYLIGFVLSVILTAIPFWLVMSGAIDNKQATAIVIMA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
FAVVQIVVHMVFFLHMKTASEGGWSMLALIFTLILVVIVLTGSLWVMYHLNANMMPGLHD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCHHH
MREMP
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]