Click here to switch to the map view.

The map label for this gene is hofD [C]

Identifier: 13475693

GI number: 13475693

Start: 5616160

End: 5616654

Strand: Reverse

Name: hofD [C]

Synonym: mll6828

Alternate gene names: 13475693

Gene position: 5616654-5616160 (Counterclockwise)

Preceding gene: 13475694

Following gene: 13475692

Centisome position: 79.83

GC content: 69.09

Gene sequence:

>495_bases
ATGGTGACGCACCCCTCTCTCGTGCTTGCCGCGACGATCGCCCTGGCGGTTGTGCTTGGCGCCATTTCGATCGCCGATTT
CCGCCGGCAGATCATCCCGGACGGGCTCAACCTGGCGCTCGCCGGGATCGGCCTTTCCTATCAGCTGGCGGCCGACGCCG
ACGCAATGCCGCAGCGCCTGCTCTTCGCCGCCGCGACCTTCGCCGCCGCCTGGCTGCTGAGGCGCGGCCATTTCCTCATG
ACCGGACGCATCGGCCTCGGCCTCGGCGACGTCAAGATGCTGGCGGCCGCTTCATGCTGGATCAGCCCGCTGCTGTTGCC
GGTGCTGCTGTTCATCGCCAGCGCCAGCGCTTTGCTGTTCGTCGGCGGCCAGGTGGTCGCGACGGGGCCGGCGGCGGCGC
GGGCCCGCGTCGCCTTCGGTCCGTTCATCGCCATCGGCCTCGGCGCAAGCTGGGCGCTGGAGCAATTTGCAGGTCTAGAC
ATGGGACTGCTCTGA

Upstream 100 bases:

>100_bases
CCGACGAATTCCGCGGCAAGATCAGCCTGCAGACGCCGATCCAGAAGCGGCGCGGCGGCACCAAGCTGCAGCAGGATTTG
AAGAGGCTGGCGTATTGACG

Downstream 100 bases:

>100_bases
TGATGCGCTTTCTTCAACCCTCCGAAAGACTTCAATCCTCCGAAAAAACGGGCCGCGCTCGCGACGATCGCGAAGGCGGT
TTCACCCTGGTCGAGCTTCT

Product: type IV prepilin peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MVTHPSLVLAATIALAVVLGAISIADFRRQIIPDGLNLALAGIGLSYQLAADADAMPQRLLFAAATFAAAWLLRRGHFLM
TGRIGLGLGDVKMLAAASCWISPLLLPVLLFIASASALLFVGGQVVATGPAAARARVAFGPFIAIGLGASWALEQFAGLD
MGLL

Sequences:

>Translated_164_residues
MVTHPSLVLAATIALAVVLGAISIADFRRQIIPDGLNLALAGIGLSYQLAADADAMPQRLLFAAATFAAAWLLRRGHFLM
TGRIGLGLGDVKMLAAASCWISPLLLPVLLFIASASALLFVGGQVVATGPAAARARVAFGPFIAIGLGASWALEQFAGLD
MGLL
>Mature_164_residues
MVTHPSLVLAATIALAVVLGAISIADFRRQIIPDGLNLALAGIGLSYQLAADADAMPQRLLFAAATFAAAWLLRRGHFLM
TGRIGLGLGDVKMLAAASCWISPLLLPVLLFIASASALLFVGGQVVATGPAAARARVAFGPFIAIGLGASWALEQFAGLD
MGLL

Specific function: Cleaves Type-4 Fimbrial Leader Sequence And Methylates The N-Terminal (Generally Phe) Residue (By Similarity). [C]

COG id: COG1989

COG function: function code NOU; Type II secretory pathway, prepilin signal peptidase PulO and related peptidases

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.23.43; 2.1.1.-

Molecular weight: Translated: 16836; Mature: 16836

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTHPSLVLAATIALAVVLGAISIADFRRQIIPDGLNLALAGIGLSYQLAADADAMPQRL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCHHHHHH
LFAAATFAAAWLLRRGHFLMTGRIGLGLGDVKMLAAASCWISPLLLPVLLFIASASALLF
HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE
VGGQVVATGPAAARARVAFGPFIAIGLGASWALEQFAGLDMGLL
ECCEEEECCCHHHHHHHHHCCCCEEECCCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVTHPSLVLAATIALAVVLGAISIADFRRQIIPDGLNLALAGIGLSYQLAADADAMPQRL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCHHHHHH
LFAAATFAAAWLLRRGHFLMTGRIGLGLGDVKMLAAASCWISPLLLPVLLFIASASALLF
HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE
VGGQVVATGPAAARARVAFGPFIAIGLGASWALEQFAGLDMGLL
ECCEEEECCCHHHHHHHHHCCCCEEECCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA