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The map label for this gene is xpsD [H]

Identifier: 13475694

GI number: 13475694

Start: 5616657

End: 5618783

Strand: Reverse

Name: xpsD [H]

Synonym: mll6829

Alternate gene names: 13475694

Gene position: 5618783-5616657 (Counterclockwise)

Preceding gene: 13475695

Following gene: 13475693

Centisome position: 79.86

GC content: 64.08

Gene sequence:

>2127_bases
ATGTCGAGCAAGCCGAGTCATTGCGTCGTGTTGTTCACGCTGCTGGCTGTTGCCGGCTGCACCTCCGCGCCGGGCAAGGA
CTTCTTCACCGAGACCATCGACAGCCTGCACGCCAAGAACTCGCCGCTGCGGGCGGGCTATAGCGGGCCTGCCGCCGTCA
CTTCGGCGTCGAGCGCGGCACAGCGCTTCAACGGCGCGCAATATCAGGGCACTGGCCAGTTCGTCTCGTCGGGCGCCCCG
GTCACCAAGGTGACGAGCGACGGCTCCGGCAAGTTCGAGCTCAACCTGGTCAACGCGCCGATCGCCGACGCGGCCAAGGC
GGTGCTGGGCGACGCGCTGCACCTCAACTACATCGTCGACCCGCGCGTGCAGGGCACGGTGACGCTGCAGACCTCGCAGC
CGGTGTCGCAGGACGCGCTGGTCGACATCCTGCAATCGGCGCTGGCGGTGAACGCCGCCGGCATCACCAGCCGCGCCGGC
ACCTACCAGATCGTGCCGCTGTCGGAGATCATGGCCAGCACTCCGCCGGTCAGCGTGCCGTCGACCTCACCGTCCGGTCC
CGGCGTCAAGGTGCAGGTGCTGCAGCTGCAATTCATCGCCGCCGACGAGATGAAGACCATTCTGGAACCGATCACCCGCC
AGGGCTCGGTGCTGCGCGTCGATTCCACCCGCAACATCATCACCGTCGCCGGCAGCGACAGCGACCTCAATGCCATCCGC
GAAGCGGTCTCGGTGTTCGATGTCGACTGGATGCGCGGCATGTCGGTGGCGCTGCACCCCTTGAAGACCTCCAAGCCGGA
AGCGGTCGCCGCCGAACTCGATTCGATCTTCGGCACCAAGGAAGGGCCAGGCGCCAAGCTCATCCAGTTCATCCCCAACG
ACAGGCTGAATTCGGTGCTGGTGATCACCTCGCGCCCGGCCTATCTGGCGCGCGCGGCAACCTGGATCAACAAGCTCGAC
AGGCTGGCCGAGACCAATGAAAGCCAGCTCTTCGTCTACCAGATCCAGAACCGGCCGGCCAAGGAACTGGCATCGGTGCT
GAGTTCGGTTCTCGGCACCACGGTGAAGACCGAAGGCCAATCGGGCGGCTCGAACGTGGCGCCCGACCAGACGCCGATCG
CCATGCAGTCGGACGGCGTCACACCGGCGCCGCTGACCGGGCCTTCGCCCTCGCTGCCTCAGCAGGACAATCAGGCGCCC
GCCCATGCCACTGTCGTCGCCGATGTCGAGAACAATGCGCTGCTGATCCAGACCACGGCGCGCGACTACCAGCGCATCGA
GCAGATCCTGTCCAAGGTCGACGTGCTGCCGACGCAAGTCATGCTGGAAGCGGTGATCGCCGAAGTCACGCTCAACGACG
ATTTGAAATACGGCCTGCGCTGGTTCTTCGAGAATGGCGGTACCAAGGTCTCCGTGACCGACGTGGCCAAGGCCGCCGCG
GCGGCCACCCTGCCCGGCTTCAACTGGAGCTATGCAACCGACAACATCCAGGTGACGCTGAACGCGCTTTCCAAGATCAC
CGACGTCAACGTCATTTCGGCGCCCACCATCATGGCGCTCAACAACCAGAAGGCGATCCTGCAGGTCGGCGACCAGGTGC
CGATCCTGACCCAGCAATCGCAGGACACCGGCAACGGCAGCGCGCCGATCATCAACTCGGTCCAGATGAAGGATACCGGC
GTCATCCTGACGGTGACGCCGCGCATCAACAATGCCGGCAGGGTCATGCTCGACATCCAGCAGGAGGTCAGCAACGTCAC
CAAGACGGACAGTTCCGATATCGACTCGCCAACCATCCAGCAGCGCAAGGTCCAGACGCGCGTGCTGGTCAATGACGGCG
AGAGCCTGGCGCTGGGCGGCCTCATCCAGCAGAACAACAGTGTCGACCGCAGCCAGGTGCCGATCCTCGGCGACATCCCT
ATACTCGGCAATGCGTTCAAGCAAAAGGACGACACGATCAGACGGACCGAATTGATTATCTTCATCCGGCCACATGTCGT
GCGTGATATCAACGAAGCCCGCGAGGTGACCGACGAATTCCGCGGCAAGATCAGCCTGCAGACGCCGATCCAGAAGCGGC
GCGGCGGCACCAAGCTGCAGCAGGATTTGAAGAGGCTGGCGTATTGA

Upstream 100 bases:

>100_bases
CACAACCCACCTACCCTGTGGATAGACCCCAAACACCGCCATCATTCCCGACATCGGCTTGCAAGAAGCCCTAGACTGAG
GCTCTTGGGGAATCGGGTGG

Downstream 100 bases:

>100_bases
CGATGGTGACGCACCCCTCTCTCGTGCTTGCCGCGACGATCGCCCTGGCGGTTGTGCTTGGCGCCATTTCGATCGCCGAT
TTCCGCCGGCAGATCATCCC

Product: general secretion proteinD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 708; Mature: 707

Protein sequence:

>708_residues
MSSKPSHCVVLFTLLAVAGCTSAPGKDFFTETIDSLHAKNSPLRAGYSGPAAVTSASSAAQRFNGAQYQGTGQFVSSGAP
VTKVTSDGSGKFELNLVNAPIADAAKAVLGDALHLNYIVDPRVQGTVTLQTSQPVSQDALVDILQSALAVNAAGITSRAG
TYQIVPLSEIMASTPPVSVPSTSPSGPGVKVQVLQLQFIAADEMKTILEPITRQGSVLRVDSTRNIITVAGSDSDLNAIR
EAVSVFDVDWMRGMSVALHPLKTSKPEAVAAELDSIFGTKEGPGAKLIQFIPNDRLNSVLVITSRPAYLARAATWINKLD
RLAETNESQLFVYQIQNRPAKELASVLSSVLGTTVKTEGQSGGSNVAPDQTPIAMQSDGVTPAPLTGPSPSLPQQDNQAP
AHATVVADVENNALLIQTTARDYQRIEQILSKVDVLPTQVMLEAVIAEVTLNDDLKYGLRWFFENGGTKVSVTDVAKAAA
AATLPGFNWSYATDNIQVTLNALSKITDVNVISAPTIMALNNQKAILQVGDQVPILTQQSQDTGNGSAPIINSVQMKDTG
VILTVTPRINNAGRVMLDIQQEVSNVTKTDSSDIDSPTIQQRKVQTRVLVNDGESLALGGLIQQNNSVDRSQVPILGDIP
ILGNAFKQKDDTIRRTELIIFIRPHVVRDINEAREVTDEFRGKISLQTPIQKRRGGTKLQQDLKRLAY

Sequences:

>Translated_708_residues
MSSKPSHCVVLFTLLAVAGCTSAPGKDFFTETIDSLHAKNSPLRAGYSGPAAVTSASSAAQRFNGAQYQGTGQFVSSGAP
VTKVTSDGSGKFELNLVNAPIADAAKAVLGDALHLNYIVDPRVQGTVTLQTSQPVSQDALVDILQSALAVNAAGITSRAG
TYQIVPLSEIMASTPPVSVPSTSPSGPGVKVQVLQLQFIAADEMKTILEPITRQGSVLRVDSTRNIITVAGSDSDLNAIR
EAVSVFDVDWMRGMSVALHPLKTSKPEAVAAELDSIFGTKEGPGAKLIQFIPNDRLNSVLVITSRPAYLARAATWINKLD
RLAETNESQLFVYQIQNRPAKELASVLSSVLGTTVKTEGQSGGSNVAPDQTPIAMQSDGVTPAPLTGPSPSLPQQDNQAP
AHATVVADVENNALLIQTTARDYQRIEQILSKVDVLPTQVMLEAVIAEVTLNDDLKYGLRWFFENGGTKVSVTDVAKAAA
AATLPGFNWSYATDNIQVTLNALSKITDVNVISAPTIMALNNQKAILQVGDQVPILTQQSQDTGNGSAPIINSVQMKDTG
VILTVTPRINNAGRVMLDIQQEVSNVTKTDSSDIDSPTIQQRKVQTRVLVNDGESLALGGLIQQNNSVDRSQVPILGDIP
ILGNAFKQKDDTIRRTELIIFIRPHVVRDINEAREVTDEFRGKISLQTPIQKRRGGTKLQQDLKRLAY
>Mature_707_residues
SSKPSHCVVLFTLLAVAGCTSAPGKDFFTETIDSLHAKNSPLRAGYSGPAAVTSASSAAQRFNGAQYQGTGQFVSSGAPV
TKVTSDGSGKFELNLVNAPIADAAKAVLGDALHLNYIVDPRVQGTVTLQTSQPVSQDALVDILQSALAVNAAGITSRAGT
YQIVPLSEIMASTPPVSVPSTSPSGPGVKVQVLQLQFIAADEMKTILEPITRQGSVLRVDSTRNIITVAGSDSDLNAIRE
AVSVFDVDWMRGMSVALHPLKTSKPEAVAAELDSIFGTKEGPGAKLIQFIPNDRLNSVLVITSRPAYLARAATWINKLDR
LAETNESQLFVYQIQNRPAKELASVLSSVLGTTVKTEGQSGGSNVAPDQTPIAMQSDGVTPAPLTGPSPSLPQQDNQAPA
HATVVADVENNALLIQTTARDYQRIEQILSKVDVLPTQVMLEAVIAEVTLNDDLKYGLRWFFENGGTKVSVTDVAKAAAA
ATLPGFNWSYATDNIQVTLNALSKITDVNVISAPTIMALNNQKAILQVGDQVPILTQQSQDTGNGSAPIINSVQMKDTGV
ILTVTPRINNAGRVMLDIQQEVSNVTKTDSSDIDSPTIQQRKVQTRVLVNDGESLALGGLIQQNNSVDRSQVPILGDIPI
LGNAFKQKDDTIRRTELIIFIRPHVVRDINEAREVTDEFRGKISLQTPIQKRRGGTKLQQDLKRLAY

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=619, Percent_Identity=25.0403877221325, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI1789793, Length=276, Percent_Identity=27.8985507246377, Blast_Score=99, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 75562; Mature: 75430

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKPSHCVVLFTLLAVAGCTSAPGKDFFTETIDSLHAKNSPLRAGYSGPAAVTSASSAA
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
QRFNGAQYQGTGQFVSSGAPVTKVTSDGSGKFELNLVNAPIADAAKAVLGDALHLNYIVD
HHCCCCCCCCCCHHHCCCCCEEEEECCCCCEEEEEEECCCHHHHHHHHHCCCEEEEEEEC
PRVQGTVTLQTSQPVSQDALVDILQSALAVNAAGITSRAGTYQIVPLSEIMASTPPVSVP
CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCC
STSPSGPGVKVQVLQLQFIAADEMKTILEPITRQGSVLRVDSTRNIITVAGSDSDLNAIR
CCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHH
EAVSVFDVDWMRGMSVALHPLKTSKPEAVAAELDSIFGTKEGPGAKLIQFIPNDRLNSVL
HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCEEE
VITSRPAYLARAATWINKLDRLAETNESQLFVYQIQNRPAKELASVLSSVLGTTVKTEGQ
EEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCEEEECCC
SGGSNVAPDQTPIAMQSDGVTPAPLTGPSPSLPQQDNQAPAHATVVADVENNALLIQTTA
CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECH
RDYQRIEQILSKVDVLPTQVMLEAVIAEVTLNDDLKYGLRWFFENGGTKVSVTDVAKAAA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCEEEEEECCCCEEEHHHHHHHHH
AATLPGFNWSYATDNIQVTLNALSKITDVNVISAPTIMALNNQKAILQVGDQVPILTQQS
HHCCCCCCCEEECCCEEEEEHHHHHHCCCEEECCCEEEEECCCCEEEEECCCCCEEECCC
QDTGNGSAPIINSVQMKDTGVILTVTPRINNAGRVMLDIQQEVSNVTKTDSSDIDSPTIQ
CCCCCCCCCEEECEEECCCCEEEEEECCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCHH
QRKVQTRVLVNDGESLALGGLIQQNNSVDRSQVPILGDIPILGNAFKQKDDTIRRTELII
HHHEEEEEEEECCCCEEECCEEECCCCCCCCCCCEEECCCCCCCHHHCCCCCEEEEEEEE
FIRPHVVRDINEAREVTDEFRGKISLQTPIQKRRGGTKLQQDLKRLAY
EECCHHHHHHHHHHHHHHHHCCEEEEECCHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SSKPSHCVVLFTLLAVAGCTSAPGKDFFTETIDSLHAKNSPLRAGYSGPAAVTSASSAA
CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
QRFNGAQYQGTGQFVSSGAPVTKVTSDGSGKFELNLVNAPIADAAKAVLGDALHLNYIVD
HHCCCCCCCCCCHHHCCCCCEEEEECCCCCEEEEEEECCCHHHHHHHHHCCCEEEEEEEC
PRVQGTVTLQTSQPVSQDALVDILQSALAVNAAGITSRAGTYQIVPLSEIMASTPPVSVP
CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCC
STSPSGPGVKVQVLQLQFIAADEMKTILEPITRQGSVLRVDSTRNIITVAGSDSDLNAIR
CCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHH
EAVSVFDVDWMRGMSVALHPLKTSKPEAVAAELDSIFGTKEGPGAKLIQFIPNDRLNSVL
HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCEEE
VITSRPAYLARAATWINKLDRLAETNESQLFVYQIQNRPAKELASVLSSVLGTTVKTEGQ
EEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCEEEECCC
SGGSNVAPDQTPIAMQSDGVTPAPLTGPSPSLPQQDNQAPAHATVVADVENNALLIQTTA
CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECH
RDYQRIEQILSKVDVLPTQVMLEAVIAEVTLNDDLKYGLRWFFENGGTKVSVTDVAKAAA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCEEEEEECCCCEEEHHHHHHHHH
AATLPGFNWSYATDNIQVTLNALSKITDVNVISAPTIMALNNQKAILQVGDQVPILTQQS
HHCCCCCCCEEECCCEEEEEHHHHHHCCCEEECCCEEEEECCCCEEEEECCCCCEEECCC
QDTGNGSAPIINSVQMKDTGVILTVTPRINNAGRVMLDIQQEVSNVTKTDSSDIDSPTIQ
CCCCCCCCCEEECEEECCCCEEEEEECCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCHH
QRKVQTRVLVNDGESLALGGLIQQNNSVDRSQVPILGDIPILGNAFKQKDDTIRRTELII
HHHEEEEEEEECCCCEEECCEEECCCCCCCCCCCEEECCCCCCCHHHCCCCCEEEEEEEE
FIRPHVVRDINEAREVTDEFRGKISLQTPIQKRRGGTKLQQDLKRLAY
EECCHHHHHHHHHHHHHHHHCCEEEEECCHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]