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The map label for this gene is pecT [H]

Identifier: 13475659

GI number: 13475659

Start: 5582375

End: 5583223

Strand: Reverse

Name: pecT [H]

Synonym: mll6783

Alternate gene names: 13475659

Gene position: 5583223-5582375 (Counterclockwise)

Preceding gene: 13475661

Following gene: 13475658

Centisome position: 79.35

GC content: 64.66

Gene sequence:

>849_bases
ATGCTCGATCTCGTCCAACTTCGCAGCTTCGTGACCGTCCAGCAGATGGGAAGCTTTACCTTCGCGGCCGAAAGGCTGGG
ACTCGGGCAATCCACTGTCAGCCAGCACATCGGCAAGCTGGAGGCCGCGCTTGGCAGGCAGTTGCTGGCCCGCGATACGC
ACAAGGTGGTGCTGACGCCAGACGGCGAAGCCCTGCTCGGCCATGCCCGGACCCTGTTGTCGATAGAGGGACAGGTGCAG
GCGCTGTTCACCGCACAGCGGCTGCGGGGTACCTTGAGGCTCGGCGTATCCGAGGACCTGGTGACGAGCCGGCTGCCGCT
GGTGCTGGAGGATTTCGTCCGGTCTCACCCATCCGTTGATCTTGAACTGACCGTCGCGTTGAGCGGCGTGCTCTACCAGA
TGCAGGACAATGGCGAGCTCGATCTCGTTCTGGCAAAGCGCCGGCTGGGCGACAGCCGTGGCCGGCTCGTCTATCGCGAG
CCGCTTGTCTGGCTCGCCCGCGATCCGGAACACGTCCTGTCGCTCGCGGCCTTGCCGCTGATTGCCTTCCCCGCGCCGAG
CGTCACCCGCAGCATTGCGCTGGAAGTGCTCGAACGGCATCGCATGCCGTGGCGCATTGTCTGCACATGCGGGAGCCTGA
GCGGGCTGACGGCCGCCGCCCGCGCCGGCATGGGGGTTCTGGTGCAACCGCAAAGCATGTCGCCCCCGGGTTTGAAAGAG
ATCTCATCAGGGCGCCTGCCGCCGTTGGAGGATGTGGAATTTGTCCTTATCCCGAGCAAGAGCGCCGACAGGGCCCTCGT
CTCGGCGTTGTCGGAAGATATTCTGACCAAGGTGAGAGGTCTGCGCTGA

Upstream 100 bases:

>100_bases
AGCGGCGCATCAGATGTTCGCTCCAGAGTGGCGACGCCGTCTTTTTACGCATTGCGAAACAAGATACAATAAATAACAGT
TATCGTGATTTGGGATATCA

Downstream 100 bases:

>100_bases
CTCATTTGACGTTTGACGGAGCCCTCACGCCCGGACACGTCTTGCTGATGCCTCTCATGTCGAAGGCGCAATGTCTGGCC
AGGTTCTTCCCTGGCAGGCC

Product: transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MLDLVQLRSFVTVQQMGSFTFAAERLGLGQSTVSQHIGKLEAALGRQLLARDTHKVVLTPDGEALLGHARTLLSIEGQVQ
ALFTAQRLRGTLRLGVSEDLVTSRLPLVLEDFVRSHPSVDLELTVALSGVLYQMQDNGELDLVLAKRRLGDSRGRLVYRE
PLVWLARDPEHVLSLAALPLIAFPAPSVTRSIALEVLERHRMPWRIVCTCGSLSGLTAAARAGMGVLVQPQSMSPPGLKE
ISSGRLPPLEDVEFVLIPSKSADRALVSALSEDILTKVRGLR

Sequences:

>Translated_282_residues
MLDLVQLRSFVTVQQMGSFTFAAERLGLGQSTVSQHIGKLEAALGRQLLARDTHKVVLTPDGEALLGHARTLLSIEGQVQ
ALFTAQRLRGTLRLGVSEDLVTSRLPLVLEDFVRSHPSVDLELTVALSGVLYQMQDNGELDLVLAKRRLGDSRGRLVYRE
PLVWLARDPEHVLSLAALPLIAFPAPSVTRSIALEVLERHRMPWRIVCTCGSLSGLTAAARAGMGVLVQPQSMSPPGLKE
ISSGRLPPLEDVEFVLIPSKSADRALVSALSEDILTKVRGLR
>Mature_282_residues
MLDLVQLRSFVTVQQMGSFTFAAERLGLGQSTVSQHIGKLEAALGRQLLARDTHKVVLTPDGEALLGHARTLLSIEGQVQ
ALFTAQRLRGTLRLGVSEDLVTSRLPLVLEDFVRSHPSVDLELTVALSGVLYQMQDNGELDLVLAKRRLGDSRGRLVYRE
PLVWLARDPEHVLSLAALPLIAFPAPSVTRSIALEVLERHRMPWRIVCTCGSLSGLTAAARAGMGVLVQPQSMSPPGLKE
ISSGRLPPLEDVEFVLIPSKSADRALVSALSEDILTKVRGLR

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=273, Percent_Identity=30.03663003663, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788297, Length=241, Percent_Identity=28.6307053941909, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787806, Length=258, Percent_Identity=24.8062015503876, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786448, Length=142, Percent_Identity=35.2112676056338, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787589, Length=157, Percent_Identity=34.3949044585987, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788748, Length=286, Percent_Identity=27.972027972028, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI145693193, Length=117, Percent_Identity=35.8974358974359, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=236, Percent_Identity=28.3898305084746, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790208, Length=148, Percent_Identity=31.7567567567568, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI2367136, Length=141, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30685; Mature: 30685

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLVQLRSFVTVQQMGSFTFAAERLGLGQSTVSQHIGKLEAALGRQLLARDTHKVVLTP
CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
DGEALLGHARTLLSIEGQVQALFTAQRLRGTLRLGVSEDLVTSRLPLVLEDFVRSHPSVD
CCCHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCC
LELTVALSGVLYQMQDNGELDLVLAKRRLGDSRGRLVYREPLVWLARDPEHVLSLAALPL
EEEEEEEEEEEEEECCCCCEEEEEEHHHCCCCCCCEEEECCEEEEECCHHHHHHHHHHHH
IAFPAPSVTRSIALEVLERHRMPWRIVCTCGSLSGLTAAARAGMGVLVQPQSMSPPGLKE
HCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCEEEECCCCCCCCHHH
ISSGRLPPLEDVEFVLIPSKSADRALVSALSEDILTKVRGLR
HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLDLVQLRSFVTVQQMGSFTFAAERLGLGQSTVSQHIGKLEAALGRQLLARDTHKVVLTP
CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
DGEALLGHARTLLSIEGQVQALFTAQRLRGTLRLGVSEDLVTSRLPLVLEDFVRSHPSVD
CCCHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCC
LELTVALSGVLYQMQDNGELDLVLAKRRLGDSRGRLVYREPLVWLARDPEHVLSLAALPL
EEEEEEEEEEEEEECCCCCEEEEEEHHHCCCCCCCEEEECCEEEEECCHHHHHHHHHHHH
IAFPAPSVTRSIALEVLERHRMPWRIVCTCGSLSGLTAAARAGMGVLVQPQSMSPPGLKE
HCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCEEEECCCCCCCCHHH
ISSGRLPPLEDVEFVLIPSKSADRALVSALSEDILTKVRGLR
HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]