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The map label for this gene is yciR [C]

Identifier: 13475596

GI number: 13475596

Start: 5500229

End: 5501785

Strand: Reverse

Name: yciR [C]

Synonym: mll6708

Alternate gene names: 13475596

Gene position: 5501785-5500229 (Counterclockwise)

Preceding gene: 13475597

Following gene: 13475595

Centisome position: 78.19

GC content: 59.73

Gene sequence:

>1557_bases
GTGGTGGCGACGGGCGCCGCCATCTGGGCGATCTACCCGAGCTTCCTCGATGCGAGGTGCCGCGACGAATTTCTTCGGGT
GTTCCAGGGCGGCTCTCCGGCAAGCATCGACTTGCCGCCATCATCGGGCGAAGCGCCCCGGTCCGTTTTCGTCTTCGGCA
CCGCGAATGGTGTGGGGATCATCGAATCAAGGAAGCATGGCGGGCGAAGCGCGGCGGAGGAGCAGGAGCGTGGAATTCTG
CTCCATCTGGCGACGCACGACGTGCTGACTGGACTGCAGAATCGGCGGCGATTCGGCGAGCAGTTGCAGCAGGCACTGGC
GGCCCTCGGTGAACCAAAGCCGAAAGCCGCCCTGCTGCAGATCGACCTTGACGATTTCAAATCGGTCAACGATACGCTCG
GCCATGGAGCGGGCGACACGCTTCTGCAGCTGGCTGCGGGTCGTATCCGCGACGCGCTGCAGGACGGCGAATCGGCATAC
CGGTATGCCGGCGATGAGTTCGCAGTCATCCAATTGGGAAAGGAGCAGCCAGCAGAGGCTGAGCGCCTCGCCGGATCGCT
GGTCGACGCCTTCAAGACCCCCTTCGTCATCAACGGCATCCCCGTCTTCGTCGGCTCGAGCATCGGAATTGCTTTCGGGC
CCGAACACGGGACCGATGGCGAGCAGTTGATGAAAGCCGCTGACATTGCTCTTTACGCAGCCAAGACCGATGGACGCGGC
TGCGCTCGAACATTCAACCGTTCGATGCTGCTCTTACTCGAGCAACGCGAGAATCTGAGGCGCAGCCTTCGAACCGCGCT
GGAGCGGGGCGAGCTTTATCTCGAGTATCAGCCGCTCATTCGCCCTCCCGCGTCGGTGATCGGTTTCGAAGCGCTGTTGC
GGTGGCGGCACCCCGAGGTCGGAATCATTCCTCCCAGCGTGTTCATACCGATCGCCGAAGCCGACGGCCTGATGGACCAG
ATTGGACGATGGGTGCTCGAGGAAGCCTGTCGCCAGGCATTGACCTGGCCTTCCTCGCTGACAGTCGCAGTCAACCTCTC
GCCGGCTCAGTTCCTTAGCGGCACGCTGACAGACACGGTCGCCCAGGTCATCGACGCAGTTGGAATCCGGGCCGACAGAC
TTGAACTTGAGATAACTGAGACGGTTCTTCTTGAGAAGACGATCGACAATATTGACACGTTAAATACTCTGAATGTCTTA
GGAATACGAATTTCGCTCGACGATTTCGGTACATACTATTCGTCGTTGAGTTACCTCAAGAACTTTCCATTCGACACATT
GAAGATAGACCAATACTTCATTGCAGACCTAGAGACCGATCTCAAGAGCCAGACGATCGTGCGATCGATCATCAGTCTGG
CGCACGGCCTGGGAATAAGCGTCACCGCCGAGGGGGTCGAGACGTCGGTACAGGCACGGTGGCTGATCAAGGAGAACTGC
GATTGCCTGCAGGGTAATTTCCTGGGTCGGCCGCTTGGAGCCGAGGCAACCAGCGATTTCATCAGGCGGTCCCCGTTGAG
GGTGGTACGCGCGATGGAGGCAAATCGGGCGGTCTAG

Upstream 100 bases:

>100_bases
CGCTGACCTTTTGGCGAACACGACCGAACTCTTGTCGTTCTATGACCGCGACTTCTGTCTGACGCACTACGCAACTACGC
TCAAAGGCGTATACGGAGGC

Downstream 100 bases:

>100_bases
GACGTAGACTCATTACCGCGTAGCCAGATGCGGATTGCGACGAGTTTGAGGGCGGCAAGATAGTTCTCAGCCAGCTTGTC
GTATCGGGTTGCGATACGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MVATGAAIWAIYPSFLDARCRDEFLRVFQGGSPASIDLPPSSGEAPRSVFVFGTANGVGIIESRKHGGRSAAEEQERGIL
LHLATHDVLTGLQNRRRFGEQLQQALAALGEPKPKAALLQIDLDDFKSVNDTLGHGAGDTLLQLAAGRIRDALQDGESAY
RYAGDEFAVIQLGKEQPAEAERLAGSLVDAFKTPFVINGIPVFVGSSIGIAFGPEHGTDGEQLMKAADIALYAAKTDGRG
CARTFNRSMLLLLEQRENLRRSLRTALERGELYLEYQPLIRPPASVIGFEALLRWRHPEVGIIPPSVFIPIAEADGLMDQ
IGRWVLEEACRQALTWPSSLTVAVNLSPAQFLSGTLTDTVAQVIDAVGIRADRLELEITETVLLEKTIDNIDTLNTLNVL
GIRISLDDFGTYYSSLSYLKNFPFDTLKIDQYFIADLETDLKSQTIVRSIISLAHGLGISVTAEGVETSVQARWLIKENC
DCLQGNFLGRPLGAEATSDFIRRSPLRVVRAMEANRAV

Sequences:

>Translated_518_residues
MVATGAAIWAIYPSFLDARCRDEFLRVFQGGSPASIDLPPSSGEAPRSVFVFGTANGVGIIESRKHGGRSAAEEQERGIL
LHLATHDVLTGLQNRRRFGEQLQQALAALGEPKPKAALLQIDLDDFKSVNDTLGHGAGDTLLQLAAGRIRDALQDGESAY
RYAGDEFAVIQLGKEQPAEAERLAGSLVDAFKTPFVINGIPVFVGSSIGIAFGPEHGTDGEQLMKAADIALYAAKTDGRG
CARTFNRSMLLLLEQRENLRRSLRTALERGELYLEYQPLIRPPASVIGFEALLRWRHPEVGIIPPSVFIPIAEADGLMDQ
IGRWVLEEACRQALTWPSSLTVAVNLSPAQFLSGTLTDTVAQVIDAVGIRADRLELEITETVLLEKTIDNIDTLNTLNVL
GIRISLDDFGTYYSSLSYLKNFPFDTLKIDQYFIADLETDLKSQTIVRSIISLAHGLGISVTAEGVETSVQARWLIKENC
DCLQGNFLGRPLGAEATSDFIRRSPLRVVRAMEANRAV
>Mature_518_residues
MVATGAAIWAIYPSFLDARCRDEFLRVFQGGSPASIDLPPSSGEAPRSVFVFGTANGVGIIESRKHGGRSAAEEQERGIL
LHLATHDVLTGLQNRRRFGEQLQQALAALGEPKPKAALLQIDLDDFKSVNDTLGHGAGDTLLQLAAGRIRDALQDGESAY
RYAGDEFAVIQLGKEQPAEAERLAGSLVDAFKTPFVINGIPVFVGSSIGIAFGPEHGTDGEQLMKAADIALYAAKTDGRG
CARTFNRSMLLLLEQRENLRRSLRTALERGELYLEYQPLIRPPASVIGFEALLRWRHPEVGIIPPSVFIPIAEADGLMDQ
IGRWVLEEACRQALTWPSSLTVAVNLSPAQFLSGTLTDTVAQVIDAVGIRADRLELEITETVLLEKTIDNIDTLNTLNVL
GIRISLDDFGTYYSSLSYLKNFPFDTLKIDQYFIADLETDLKSQTIVRSIISLAHGLGISVTAEGVETSVQARWLIKENC
DCLQGNFLGRPLGAEATSDFIRRSPLRVVRAMEANRAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=456, Percent_Identity=35.9649122807018, Blast_Score=265, Evalue=4e-72,
Organism=Escherichia coli, GI87081921, Length=484, Percent_Identity=31.198347107438, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI226510982, Length=414, Percent_Identity=28.5024154589372, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1790496, Length=253, Percent_Identity=34.3873517786561, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1788502, Length=256, Percent_Identity=33.203125, Blast_Score=141, Evalue=8e-35,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=34.8936170212766, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1786507, Length=250, Percent_Identity=32.4, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI87081980, Length=242, Percent_Identity=37.1900826446281, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787055, Length=252, Percent_Identity=34.5238095238095, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1788381, Length=392, Percent_Identity=28.3163265306122, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788849, Length=451, Percent_Identity=26.1640798226164, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI87081743, Length=259, Percent_Identity=29.3436293436293, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87082096, Length=236, Percent_Identity=32.2033898305085, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=36.9426751592357, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=34.9112426035503, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=36.0248447204969, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI145693134, Length=171, Percent_Identity=34.5029239766082, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081977, Length=150, Percent_Identity=34, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=35.2272727272727, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789650, Length=437, Percent_Identity=24.9427917620137, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=34.7305389221557, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=102, Percent_Identity=34.3137254901961, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=28.9940828402367, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787056, Length=172, Percent_Identity=32.5581395348837, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 56503; Mature: 56503

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVATGAAIWAIYPSFLDARCRDEFLRVFQGGSPASIDLPPSSGEAPRSVFVFGTANGVGI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEECCCCCEE
IESRKHGGRSAAEEQERGILLHLATHDVLTGLQNRRRFGEQLQQALAALGEPKPKAALLQ
EECCCCCCCCCHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
IDLDDFKSVNDTLGHGAGDTLLQLAAGRIRDALQDGESAYRYAGDEFAVIQLGKEQPAEA
EEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCHHH
ERLAGSLVDAFKTPFVINGIPVFVGSSIGIAFGPEHGTDGEQLMKAADIALYAAKTDGRG
HHHHHHHHHHHCCCEEECCCCEEECCCCCEEECCCCCCCHHHHHHHHHEEEEEECCCCCH
CARTFNRSMLLLLEQRENLRRSLRTALERGELYLEYQPLIRPPASVIGFEALLRWRHPEV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCC
GIIPPSVFIPIAEADGLMDQIGRWVLEEACRQALTWPSSLTVAVNLSPAQFLSGTLTDTV
CEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
AQVIDAVGIRADRLELEITETVLLEKTIDNIDTLNTLNVLGIRISLDDFGTYYSSLSYLK
HHHHHHHCCCCCCEEEEEHHHHHHHHHHHCHHHCCCEEEEEEEEEHHHHHHHHHHHHHHH
NFPFDTLKIDQYFIADLETDLKSQTIVRSIISLAHGLGISVTAEGVETSVQARWLIKENC
HCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHEEEEECCCC
DCLQGNFLGRPLGAEATSDFIRRSPLRVVRAMEANRAV
CCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCC
>Mature Secondary Structure
MVATGAAIWAIYPSFLDARCRDEFLRVFQGGSPASIDLPPSSGEAPRSVFVFGTANGVGI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEECCCCCEE
IESRKHGGRSAAEEQERGILLHLATHDVLTGLQNRRRFGEQLQQALAALGEPKPKAALLQ
EECCCCCCCCCHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
IDLDDFKSVNDTLGHGAGDTLLQLAAGRIRDALQDGESAYRYAGDEFAVIQLGKEQPAEA
EEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCHHH
ERLAGSLVDAFKTPFVINGIPVFVGSSIGIAFGPEHGTDGEQLMKAADIALYAAKTDGRG
HHHHHHHHHHHCCCEEECCCCEEECCCCCEEECCCCCCCHHHHHHHHHEEEEEECCCCCH
CARTFNRSMLLLLEQRENLRRSLRTALERGELYLEYQPLIRPPASVIGFEALLRWRHPEV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCC
GIIPPSVFIPIAEADGLMDQIGRWVLEEACRQALTWPSSLTVAVNLSPAQFLSGTLTDTV
CEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
AQVIDAVGIRADRLELEITETVLLEKTIDNIDTLNTLNVLGIRISLDDFGTYYSSLSYLK
HHHHHHHCCCCCCEEEEEHHHHHHHHHHHCHHHCCCEEEEEEEEEHHHHHHHHHHHHHHH
NFPFDTLKIDQYFIADLETDLKSQTIVRSIISLAHGLGISVTAEGVETSVQARWLIKENC
HCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHEEEEECCCC
DCLQGNFLGRPLGAEATSDFIRRSPLRVVRAMEANRAV
CCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]