The gene/protein map for NC_002678 is currently unavailable.
Definition Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession NC_002678
Length 7,036,071

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The map label for this gene is ddpD [H]

Identifier: 13475570

GI number: 13475570

Start: 5468818

End: 5469858

Strand: Direct

Name: ddpD [H]

Synonym: mlr6674

Alternate gene names: 13475570

Gene position: 5468818-5469858 (Clockwise)

Preceding gene: 13475569

Following gene: 13475571

Centisome position: 77.73

GC content: 63.98

Gene sequence:

>1041_bases
ATGGTGGCGGCATCCGAAATCCTGAAGCCTACCGGGCAAAAACCCGTGGCCCTGACTATCGACGGCCTGTCGCTGGAATT
TCCCACCTACGCCGGAGCGATCAAGGCGCTCGACGACGTGACGATCGAAATCGGCGCGTCCGAGATCGTTGGCCTGGTCG
GCGAGTCGGGATGCGGCAAGTCGGTGACCACGATGGCGGCGACAAGGCTCCTGCCGGAGGGCCGCTACCGCGTCACCGCG
GGCAGTATCCGCCTGTTTGGCCGCGATCCGTTCGCGATGGATGAAACCGAACTCCAGGACGTTCGCGGCAAGCTCGTCTC
GACCATCTTCCAGGAGCCGATGAACGCGCTCAATCCGACCATCCGGATTGGCCGTCAACTTGTCGGCGTCATCCAGCGCC
ACGAAGCGGTCAGTGAGGCCGAAGCCGAGCGCACGGCGCGCGGCATTCTCAAGGACATGCTGATCGCGGAACCCGAGCGG
ATCATGCGGGCCTATCCGTTCGAACTGTCGGGCGGCATGCGCCAACGCGTGCTCATCGCCATGGCCTTCTCGTGCAACCC
CGGCTTGATCATCGCCGACGAGCCGACCACGGCTCTGGATGTGACGGTGCAGGCCGTCATCCTTCGCCTGATCCTCGATC
GCGCCAAGCGAACCGGCACCTCGGTTGTCTTCATTTCGCACAACATTGCTGTTGTCTCACAGCTCTGCGACCGGCTGTAC
GTCATGTATGCGGGCCGCATCGTCGAGTCCGGCCCGACGCGGGCCGTTCTGGAAGCGCCACAGCACCCCTACACTCAAGC
GCTGCTGCGCTGTCTGCCGGAGCGGGTGGAGCCGAAAGCGGAACTGGAGGCCATCCCCGGAACCGTGCCCAATCTGCTTG
ATCCCCCGCCGGGCTGTTTCTACCGGCCACGCTGTCCGGAAGCCAACGATCGATGTTTCGCAAAGCCTCCTTCGATGGCG
CCTGCTCCCGATCATATCGTCGCCTGCTGGCGGCGCGAGACAATCCAACCATCGATCAAGGCGCGCGAGGCCACGCAATG
A

Upstream 100 bases:

>100_bases
GCACCTTCCCCGGCCTTGCCATCCTGATCACCGCGATGGGCTGCAACCTGCTTGGCGACGGCATTCGCGACATGCTCGAT
CCACGGTTGGGGGGACGATG

Downstream 100 bases:

>100_bases
CGGCCGCGCCTCTTCTCAGCGTCGAAGACCTTACCGTCAATTTTCCGATTCCCGGGGGCTGGTTCGGCCGGGCCACCTCC
CATGTCCATGCCGTCAACAA

Product: peptide ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MVAASEILKPTGQKPVALTIDGLSLEFPTYAGAIKALDDVTIEIGASEIVGLVGESGCGKSVTTMAATRLLPEGRYRVTA
GSIRLFGRDPFAMDETELQDVRGKLVSTIFQEPMNALNPTIRIGRQLVGVIQRHEAVSEAEAERTARGILKDMLIAEPER
IMRAYPFELSGGMRQRVLIAMAFSCNPGLIIADEPTTALDVTVQAVILRLILDRAKRTGTSVVFISHNIAVVSQLCDRLY
VMYAGRIVESGPTRAVLEAPQHPYTQALLRCLPERVEPKAELEAIPGTVPNLLDPPPGCFYRPRCPEANDRCFAKPPSMA
PAPDHIVACWRRETIQPSIKAREATQ

Sequences:

>Translated_346_residues
MVAASEILKPTGQKPVALTIDGLSLEFPTYAGAIKALDDVTIEIGASEIVGLVGESGCGKSVTTMAATRLLPEGRYRVTA
GSIRLFGRDPFAMDETELQDVRGKLVSTIFQEPMNALNPTIRIGRQLVGVIQRHEAVSEAEAERTARGILKDMLIAEPER
IMRAYPFELSGGMRQRVLIAMAFSCNPGLIIADEPTTALDVTVQAVILRLILDRAKRTGTSVVFISHNIAVVSQLCDRLY
VMYAGRIVESGPTRAVLEAPQHPYTQALLRCLPERVEPKAELEAIPGTVPNLLDPPPGCFYRPRCPEANDRCFAKPPSMA
PAPDHIVACWRRETIQPSIKAREATQ
>Mature_346_residues
MVAASEILKPTGQKPVALTIDGLSLEFPTYAGAIKALDDVTIEIGASEIVGLVGESGCGKSVTTMAATRLLPEGRYRVTA
GSIRLFGRDPFAMDETELQDVRGKLVSTIFQEPMNALNPTIRIGRQLVGVIQRHEAVSEAEAERTARGILKDMLIAEPER
IMRAYPFELSGGMRQRVLIAMAFSCNPGLIIADEPTTALDVTVQAVILRLILDRAKRTGTSVVFISHNIAVVSQLCDRLY
VMYAGRIVESGPTRAVLEAPQHPYTQALLRCLPERVEPKAELEAIPGTVPNLLDPPPGCFYRPRCPEANDRCFAKPPSMA
PAPDHIVACWRRETIQPSIKAREATQ

Specific function: Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for energy coupling to the transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42741659, Length=224, Percent_Identity=31.25, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI9961250, Length=249, Percent_Identity=30.1204819277108, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI4505771, Length=249, Percent_Identity=30.1204819277108, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI9961252, Length=249, Percent_Identity=30.1204819277108, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI156105685, Length=255, Percent_Identity=32.156862745098, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI105990541, Length=216, Percent_Identity=28.2407407407407, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI9955963, Length=238, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI47078218, Length=212, Percent_Identity=24.5283018867925, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI45446740, Length=212, Percent_Identity=24.5283018867925, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI116734710, Length=235, Percent_Identity=27.6595744680851, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI89111135, Length=235, Percent_Identity=25.9574468085106, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI171184400, Length=243, Percent_Identity=26.3374485596708, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787759, Length=318, Percent_Identity=54.0880503144654, Blast_Score=330, Evalue=1e-91,
Organism=Escherichia coli, GI1789963, Length=302, Percent_Identity=42.3841059602649, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI48994883, Length=321, Percent_Identity=42.6791277258567, Blast_Score=255, Evalue=3e-69,
Organism=Escherichia coli, GI1787548, Length=320, Percent_Identity=36.875, Blast_Score=208, Evalue=4e-55,
Organism=Escherichia coli, GI145693107, Length=262, Percent_Identity=42.3664122137405, Blast_Score=208, Evalue=5e-55,
Organism=Escherichia coli, GI1787500, Length=335, Percent_Identity=35.8208955223881, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1788506, Length=277, Percent_Identity=39.3501805054152, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1789962, Length=329, Percent_Identity=34.9544072948328, Blast_Score=185, Evalue=5e-48,
Organism=Escherichia coli, GI1787758, Length=327, Percent_Identity=33.3333333333333, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI1789890, Length=237, Percent_Identity=35.0210970464135, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI48994997, Length=243, Percent_Identity=33.7448559670782, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786398, Length=264, Percent_Identity=30.3030303030303, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789891, Length=240, Percent_Identity=32.5, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1789032, Length=237, Percent_Identity=29.1139240506329, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787547, Length=260, Percent_Identity=26.9230769230769, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787029, Length=244, Percent_Identity=28.2786885245902, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790162, Length=244, Percent_Identity=28.2786885245902, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788225, Length=239, Percent_Identity=32.6359832635983, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786703, Length=214, Percent_Identity=31.3084112149533, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787089, Length=253, Percent_Identity=29.6442687747036, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI48994943, Length=279, Percent_Identity=29.7491039426523, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=28.1632653061224, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1790739, Length=243, Percent_Identity=29.6296296296296, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87081791, Length=239, Percent_Identity=28.8702928870293, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI48995001, Length=265, Percent_Identity=29.0566037735849, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786563, Length=255, Percent_Identity=28.2352941176471, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787370, Length=233, Percent_Identity=28.3261802575107, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788761, Length=234, Percent_Identity=27.7777777777778, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788450, Length=244, Percent_Identity=24.5901639344262, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786319, Length=230, Percent_Identity=27.3913043478261, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082267, Length=256, Percent_Identity=28.125, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789672, Length=240, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789593, Length=225, Percent_Identity=24.8888888888889, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789873, Length=218, Percent_Identity=28.8990825688073, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788472, Length=236, Percent_Identity=27.5423728813559, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788644, Length=183, Percent_Identity=28.9617486338798, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787105, Length=241, Percent_Identity=27.8008298755187, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786872, Length=244, Percent_Identity=27.0491803278689, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790467, Length=225, Percent_Identity=27.5555555555556, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787792, Length=239, Percent_Identity=28.4518828451883, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786345, Length=222, Percent_Identity=27.4774774774775, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790534, Length=223, Percent_Identity=29.1479820627803, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787143, Length=235, Percent_Identity=29.7872340425532, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789991, Length=225, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790190, Length=240, Percent_Identity=27.5, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081709, Length=242, Percent_Identity=22.3140495867769, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787112, Length=256, Percent_Identity=27.734375, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789586, Length=225, Percent_Identity=27.1111111111111, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790525, Length=230, Percent_Identity=29.5652173913043, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788210, Length=239, Percent_Identity=26.7782426778243, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=258, Percent_Identity=29.8449612403101, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI193202349, Length=227, Percent_Identity=28.6343612334802, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI25146777, Length=294, Percent_Identity=25.5102040816327, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17569143, Length=269, Percent_Identity=28.6245353159851, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115533592, Length=254, Percent_Identity=26.3779527559055, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71984940, Length=220, Percent_Identity=25.4545454545455, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=278, Percent_Identity=25.8992805755396, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115535101, Length=247, Percent_Identity=27.5303643724696, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=259, Percent_Identity=25.0965250965251, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17569145, Length=241, Percent_Identity=26.9709543568465, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115533608, Length=227, Percent_Identity=26.8722466960352, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567265, Length=254, Percent_Identity=27.9527559055118, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115534520, Length=265, Percent_Identity=29.4339622641509, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=237, Percent_Identity=26.5822784810127, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=237, Percent_Identity=26.1603375527426, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=237, Percent_Identity=26.5822784810127, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=238, Percent_Identity=28.9915966386555, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=246, Percent_Identity=24.7967479674797, Blast_Score=65, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=246, Percent_Identity=26.4227642276423, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322640, Length=262, Percent_Identity=25.9541984732824, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6323217, Length=268, Percent_Identity=27.2388059701493, Blast_Score=66, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24641565, Length=218, Percent_Identity=30.2752293577982, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI85726357, Length=239, Percent_Identity=25.5230125523013, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17136662, Length=238, Percent_Identity=31.0924369747899, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24659289, Length=258, Percent_Identity=29.8449612403101, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28574533, Length=262, Percent_Identity=26.7175572519084, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281363262, Length=237, Percent_Identity=29.1139240506329, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24653245, Length=237, Percent_Identity=29.1139240506329, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 37736; Mature: 37736

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MVAASEILKPTGQKPVALTIDGLSLEFPTYAGAIKALDDVTIEIGASEIVGLVGESGCGK
CCCHHHHHCCCCCCCEEEEECCCEEECCHHHHHHHHHHHCEEEECHHHHHHHHCCCCCCC
SVTTMAATRLLPEGRYRVTAGSIRLFGRDPFAMDETELQDVRGKLVSTIFQEPMNALNPT
HHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHH
IRIGRQLVGVIQRHEAVSEAEAERTARGILKDMLIAEPERIMRAYPFELSGGMRQRVLIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHCCCHHHEEEEE
MAFSCNPGLIIADEPTTALDVTVQAVILRLILDRAKRTGTSVVFISHNIAVVSQLCDRLY
EEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
VMYAGRIVESGPTRAVLEAPQHPYTQALLRCLPERVEPKAELEAIPGTVPNLLDPPPGCF
HHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCC
YRPRCPEANDRCFAKPPSMAPAPDHIVACWRRETIQPSIKAREATQ
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MVAASEILKPTGQKPVALTIDGLSLEFPTYAGAIKALDDVTIEIGASEIVGLVGESGCGK
CCCHHHHHCCCCCCCEEEEECCCEEECCHHHHHHHHHHHCEEEECHHHHHHHHCCCCCCC
SVTTMAATRLLPEGRYRVTAGSIRLFGRDPFAMDETELQDVRGKLVSTIFQEPMNALNPT
HHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHH
IRIGRQLVGVIQRHEAVSEAEAERTARGILKDMLIAEPERIMRAYPFELSGGMRQRVLIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHCCCHHHEEEEE
MAFSCNPGLIIADEPTTALDVTVQAVILRLILDRAKRTGTSVVFISHNIAVVSQLCDRLY
EEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
VMYAGRIVESGPTRAVLEAPQHPYTQALLRCLPERVEPKAELEAIPGTVPNLLDPPPGCF
HHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCC
YRPRCPEANDRCFAKPPSMAPAPDHIVACWRRETIQPSIKAREATQ
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]