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The map label for this gene is ydcN [C]

Identifier: 13475566

GI number: 13475566

Start: 5464326

End: 5465009

Strand: Direct

Name: ydcN [C]

Synonym: mlr6668

Alternate gene names: 13475566

Gene position: 5464326-5465009 (Clockwise)

Preceding gene: 13475558

Following gene: 13475567

Centisome position: 77.66

GC content: 57.46

Gene sequence:

>684_bases
ATGATGGATCAGAAAGCCAGCCTGGGTGATTTCGTGCGGGAAATCCGCACCCGCAACCATTGGACGCTGTCGCAAGTCAG
CGCGATGACCGGGCTCGCCATATCGACATTGTCCAAGGTTGAAAACAACCAGATGTCGTTGACCTACGACCGCATTGTCC
AGTTGGCCGATGGGCTGAAGGTCGACATTGTCGAACTGTTCGGGACCCGAGCCACGGAAGCCACCCCGAGCCCACTGGGC
CGCCGCACGATCAGCAGGGCAGGCGAGGGCAGGTCCATCAAGACCAAGAACTACGACTATCTCTATTTGTGCACCGACAT
CTCGAAAAAGTCGATCGTCCCGATGTTTGGCGTGGCGCACGCCCGCACGATGGAAGAGTTCGGCGCCTTCATCCGCCACG
TCGGTGAGGAATATACCTATGTGGTCGAAGGCGAGCTCGAGCTCCACACCGAACACTATGAGCCAGTGACCTTGAAGGTC
GGCGACTCCGTCTATTTCGACGCAACGATGGGCCATGCATACGTGACGGTCAGCGAGAAGCCGGCGCGCTTTGTCTGCGT
TTGCTCCACGTCCGAGAAAGAACTGATCGACGCGATCGGCTCGTCCTCGATCGCTGAAAGTGCCATTTCGAAACTGGCGC
CACGCGCCAATACCGATCAACTGGCGCGTACGATAAGAAAATAA

Upstream 100 bases:

>100_bases
GAAACTTATTTTTCCGATTGATCAAGAAGTTTTCCGTATCGCGCAAAAAAATAGAATGTACTATCTTTGAGGCCTGAAAT
GCGGGAATACGGCAACGGAA

Downstream 100 bases:

>100_bases
GTTGCGCTTAGGAAAATCGCTGCCTAATCTGATCCTGCGGACAAATTGCCGGAACAGGCGTCGTTCGAGTCCGCCGAACC
TCAGAGGGTAGATAGATGGT

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator HTH_3 Family; Helix-Turn-Helix Family; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Protein; Transcriptional Regulator Xre Family; XRE Family-Like Protein; Transcriptional Regulator XRE Family With Cupin Sensor; HTH_3family Transcriptional Regulator

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MMDQKASLGDFVREIRTRNHWTLSQVSAMTGLAISTLSKVENNQMSLTYDRIVQLADGLKVDIVELFGTRATEATPSPLG
RRTISRAGEGRSIKTKNYDYLYLCTDISKKSIVPMFGVAHARTMEEFGAFIRHVGEEYTYVVEGELELHTEHYEPVTLKV
GDSVYFDATMGHAYVTVSEKPARFVCVCSTSEKELIDAIGSSSIAESAISKLAPRANTDQLARTIRK

Sequences:

>Translated_227_residues
MMDQKASLGDFVREIRTRNHWTLSQVSAMTGLAISTLSKVENNQMSLTYDRIVQLADGLKVDIVELFGTRATEATPSPLG
RRTISRAGEGRSIKTKNYDYLYLCTDISKKSIVPMFGVAHARTMEEFGAFIRHVGEEYTYVVEGELELHTEHYEPVTLKV
GDSVYFDATMGHAYVTVSEKPARFVCVCSTSEKELIDAIGSSSIAESAISKLAPRANTDQLARTIRK
>Mature_227_residues
MMDQKASLGDFVREIRTRNHWTLSQVSAMTGLAISTLSKVENNQMSLTYDRIVQLADGLKVDIVELFGTRATEATPSPLG
RRTISRAGEGRSIKTKNYDYLYLCTDISKKSIVPMFGVAHARTMEEFGAFIRHVGEEYTYVVEGELELHTEHYEPVTLKV
GDSVYFDATMGHAYVTVSEKPARFVCVCSTSEKELIDAIGSSSIAESAISKLAPRANTDQLARTIRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25224; Mature: 25224

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDQKASLGDFVREIRTRNHWTLSQVSAMTGLAISTLSKVENNQMSLTYDRIVQLADGLK
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCE
VDIVELFGTRATEATPSPLGRRTISRAGEGRSIKTKNYDYLYLCTDISKKSIVPMFGVAH
EEHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCHHHHHHH
ARTMEEFGAFIRHVGEEYTYVVEGELELHTEHYEPVTLKVGDSVYFDATMGHAYVTVSEK
HHHHHHHHHHHHHCCCCEEEEEECEEEEEECCCCEEEEEECCEEEEEEECCEEEEEECCC
PARFVCVCSTSEKELIDAIGSSSIAESAISKLAPRANTDQLARTIRK
CCEEEEEECCCHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure
MMDQKASLGDFVREIRTRNHWTLSQVSAMTGLAISTLSKVENNQMSLTYDRIVQLADGLK
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCE
VDIVELFGTRATEATPSPLGRRTISRAGEGRSIKTKNYDYLYLCTDISKKSIVPMFGVAH
EEHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCHHHHHHH
ARTMEEFGAFIRHVGEEYTYVVEGELELHTEHYEPVTLKVGDSVYFDATMGHAYVTVSEK
HHHHHHHHHHHHHCCCCEEEEEECEEEEEECCCCEEEEEECCEEEEEEECCEEEEEECCC
PARFVCVCSTSEKELIDAIGSSSIAESAISKLAPRANTDQLARTIRK
CCEEEEEECCCHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA