Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 13475380

GI number: 13475380

Start: 5252978

End: 5253886

Strand: Reverse

Name: xerD [C]

Synonym: mll6431

Alternate gene names: 13475380

Gene position: 5253886-5252978 (Counterclockwise)

Preceding gene: 13475381

Following gene: 13475379

Centisome position: 74.67

GC content: 65.79

Gene sequence:

>909_bases
ATGCCCTATCCTGTTCTTGATGCACCTATCAGTCCACTGCGTCAGCGGCTGATCGACGACATGAACATGCGACGTTTCAG
CCAGGAGACGCAGCGCAACTATCTGCGCGACATCGGACGCCTGGCGACGTTCCTCGGCCGGTCGCCGCACACAGCGACAA
CCGACGACCTGCGCCGGTTCCAGATCGAGCAGCAGGACGACGGCGTGCCGGTTCCGACGATGAACAGCATCGTGTCGGCG
CTGCGCTTCTTCTTCACGCATACGGTCGATCGTCCCGATCTGGCGCGCAAGCTCGTTCGTCTGGCGCACCCGCGCAAGCT
GCCGGTGGTGCTCAGCCGCGACGAGGTTGCCCGTCTCCTCAACGCCACCACCTGCCTCAAGCACCAGGCCGCACTGTCGG
TTGCCTATGGCGCGGGCTTGCGCGTCGCCGAGGTCTCGGCGCTGAAGGTCGCCGACATCGACAGCGAGCGCATGCTGATC
CGGGTGGAGCGCGGCAAGGGCGGCCGGTATCGCAACGCCATGCTGTCGCAAGACCTGCTCTTGTTGCTGCGTCAGTGGTG
GAAGGTCGGACGCCAGCAGGGGGTGATGCATCGCGACGGCTGGCTGTTTCCGGGGCAGCATGCGATGAAGCCCATCAGCA
CCCGCCAGCTCTATCGCGTGGTCGTCGAGGCAGCGCAGGCCGCCGACATCGCCAAGCGGGTCGGGCCGCACACGCTGCGC
CACAGCTTCGCCACCCACCTGCTGGAGGACGGCACCGACATCCGGATCATCCAGGTCCTGCTCGGGCACGCCAAGCTCAA
CAGCACCGCCTTCTACACCAAGGTTGCAACCCGCACGGTGCGCACCGTCACGAGCCCGCTCGACAAGCTTGGCCTCTTCA
AGCCGGAAGAGCTCTCACCCGACGGCTGA

Upstream 100 bases:

>100_bases
GTGGGGTGAGGTAGAGATCACGAGCCGAACGTGGCGCTCGCATTGAGGGTGGTTCGGCAGCAGCAGAGCATCACGGGCTT
CTTCAACAAGGAGCCTGACC

Downstream 100 bases:

>100_bases
GCGTGCGCGCCTCGATCGAGGTTGCCGACATCTTCCGCGCAGCAGGGCCCGCCTACCGGGCCGCTCATGCCGGGCATCTG
AGCCTCGCCGAGCTCAAGGT

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MPYPVLDAPISPLRQRLIDDMNMRRFSQETQRNYLRDIGRLATFLGRSPHTATTDDLRRFQIEQQDDGVPVPTMNSIVSA
LRFFFTHTVDRPDLARKLVRLAHPRKLPVVLSRDEVARLLNATTCLKHQAALSVAYGAGLRVAEVSALKVADIDSERMLI
RVERGKGGRYRNAMLSQDLLLLLRQWWKVGRQQGVMHRDGWLFPGQHAMKPISTRQLYRVVVEAAQAADIAKRVGPHTLR
HSFATHLLEDGTDIRIIQVLLGHAKLNSTAFYTKVATRTVRTVTSPLDKLGLFKPEELSPDG

Sequences:

>Translated_302_residues
MPYPVLDAPISPLRQRLIDDMNMRRFSQETQRNYLRDIGRLATFLGRSPHTATTDDLRRFQIEQQDDGVPVPTMNSIVSA
LRFFFTHTVDRPDLARKLVRLAHPRKLPVVLSRDEVARLLNATTCLKHQAALSVAYGAGLRVAEVSALKVADIDSERMLI
RVERGKGGRYRNAMLSQDLLLLLRQWWKVGRQQGVMHRDGWLFPGQHAMKPISTRQLYRVVVEAAQAADIAKRVGPHTLR
HSFATHLLEDGTDIRIIQVLLGHAKLNSTAFYTKVATRTVRTVTSPLDKLGLFKPEELSPDG
>Mature_301_residues
PYPVLDAPISPLRQRLIDDMNMRRFSQETQRNYLRDIGRLATFLGRSPHTATTDDLRRFQIEQQDDGVPVPTMNSIVSAL
RFFFTHTVDRPDLARKLVRLAHPRKLPVVLSRDEVARLLNATTCLKHQAALSVAYGAGLRVAEVSALKVADIDSERMLIR
VERGKGGRYRNAMLSQDLLLLLRQWWKVGRQQGVMHRDGWLFPGQHAMKPISTRQLYRVVVEAAQAADIAKRVGPHTLRH
SFATHLLEDGTDIRIIQVLLGHAKLNSTAFYTKVATRTVRTVTSPLDKLGLFKPEELSPDG

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=275, Percent_Identity=32, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790244, Length=272, Percent_Identity=30.5147058823529, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790767, Length=168, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34181; Mature: 34050

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYPVLDAPISPLRQRLIDDMNMRRFSQETQRNYLRDIGRLATFLGRSPHTATTDDLRRF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
QIEQQDDGVPVPTMNSIVSALRFFFTHTVDRPDLARKLVRLAHPRKLPVVLSRDEVARLL
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEECHHHHHHHH
NATTCLKHQAALSVAYGAGLRVAEVSALKVADIDSERMLIRVERGKGGRYRNAMLSQDLL
HHHHHHHHHHHHHHHHCCCCEEHHHHHEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHH
LLLRQWWKVGRQQGVMHRDGWLFPGQHAMKPISTRQLYRVVVEAAQAADIAKRVGPHTLR
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
HSFATHLLEDGTDIRIIQVLLGHAKLNSTAFYTKVATRTVRTVTSPLDKLGLFKPEELSP
HHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
DG
CC
>Mature Secondary Structure 
PYPVLDAPISPLRQRLIDDMNMRRFSQETQRNYLRDIGRLATFLGRSPHTATTDDLRRF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
QIEQQDDGVPVPTMNSIVSALRFFFTHTVDRPDLARKLVRLAHPRKLPVVLSRDEVARLL
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEECHHHHHHHH
NATTCLKHQAALSVAYGAGLRVAEVSALKVADIDSERMLIRVERGKGGRYRNAMLSQDLL
HHHHHHHHHHHHHHHHCCCCEEHHHHHEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHH
LLLRQWWKVGRQQGVMHRDGWLFPGQHAMKPISTRQLYRVVVEAAQAADIAKRVGPHTLR
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
HSFATHLLEDGTDIRIIQVLLGHAKLNSTAFYTKVATRTVRTVTSPLDKLGLFKPEELSP
HHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
DG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]