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The map label for this gene is fnrN [H]

Identifier: 13475362

GI number: 13475362

Start: 5231969

End: 5232724

Strand: Direct

Name: fnrN [H]

Synonym: mlr6409

Alternate gene names: 13475362

Gene position: 5231969-5232724 (Clockwise)

Preceding gene: 13475360

Following gene: 13475364

Centisome position: 74.36

GC content: 59.92

Gene sequence:

>756_bases
ATGACAGTACGGCAAGACATTCACAGTTCCGGCATTCCCGTTCTTTGCCTGTCTTGCGCAGCACGACTTCGCGGCGTCTG
CGCTGCGCTCGATCCAAACCATTTGGTTGGGCTCGCCAAAACTTCGTCGCGGCACAAGCTCGAGCCGGGGGTCGAACTGA
TCGCCGACGCCGAGGCCGTCGACAGCTATTCAAACTTGCTTTCAGGCGTTGTGAAGCTGACGAAGTGCCTTTCGGACGGC
CGCCAGCAGATTGTCGGTCTTCGGTTCGCACCGGATTTTCTGGGACGGCCCTTCAAGGTGAAAAGCACGATCAATGTGGA
AGCGGCAACCTCCGTCTCGCTGTGCTCGTTTCCGAAGGCGGCCGTTGAACGGATAATGAAGGAATCACCGGGACTCGAGC
ATCGCCTGCTCAAGCAGACGCTGGACGAACTCGACGAGGCACTTGAATGGATGGTGACTCTCGGGCGCAAGACCGCACCG
GAGAAGGTGGCGAGCTTTCTCCTCATGATCGCCCGGAATATGGATTCCAGTATCGACCCGGCGGCTGGGTCGGCATGCTT
CGATCTGCCGCTGACACGTGCCGACATCTCTGATTTCCTTGGACTGACGAACGAGACCGTGAGCCGCCAGCTTACGCGAT
TGCGGGCTGACGGCGTGATCCGGATCGAGAACAAACGCCATGTAACGGTCGACAGCATGAGCCGGCTGGAGCAGCGCTGC
GGCGGCCGAGGCGCGCGGCAACCGGCCTTTGAATGA

Upstream 100 bases:

>100_bases
CCTGATTTCGGTCAGCCTCCAGCACGGACAAACTGCCGCAAGGATTTCTCTGCCATCGCTTGCTATCCTGTCGAAACTTG
GGATCGGTAGCGCGAGCGTA

Downstream 100 bases:

>100_bases
GACCTAAGCGTCGGGGCCTTCGTCGCTTATTACGATCCGCGGCAGGACATGCTCGCGTTCGAAAGCGATGTGTCGCCGCA
AGCCTTCGAAGAAGCCGCGT

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF-240 [H]

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTVRQDIHSSGIPVLCLSCAARLRGVCAALDPNHLVGLAKTSSRHKLEPGVELIADAEAVDSYSNLLSGVVKLTKCLSDG
RQQIVGLRFAPDFLGRPFKVKSTINVEAATSVSLCSFPKAAVERIMKESPGLEHRLLKQTLDELDEALEWMVTLGRKTAP
EKVASFLLMIARNMDSSIDPAAGSACFDLPLTRADISDFLGLTNETVSRQLTRLRADGVIRIENKRHVTVDSMSRLEQRC
GGRGARQPAFE

Sequences:

>Translated_251_residues
MTVRQDIHSSGIPVLCLSCAARLRGVCAALDPNHLVGLAKTSSRHKLEPGVELIADAEAVDSYSNLLSGVVKLTKCLSDG
RQQIVGLRFAPDFLGRPFKVKSTINVEAATSVSLCSFPKAAVERIMKESPGLEHRLLKQTLDELDEALEWMVTLGRKTAP
EKVASFLLMIARNMDSSIDPAAGSACFDLPLTRADISDFLGLTNETVSRQLTRLRADGVIRIENKRHVTVDSMSRLEQRC
GGRGARQPAFE
>Mature_250_residues
TVRQDIHSSGIPVLCLSCAARLRGVCAALDPNHLVGLAKTSSRHKLEPGVELIADAEAVDSYSNLLSGVVKLTKCLSDGR
QQIVGLRFAPDFLGRPFKVKSTINVEAATSVSLCSFPKAAVERIMKESPGLEHRLLKQTLDELDEALEWMVTLGRKTAPE
KVASFLLMIARNMDSSIDPAAGSACFDLPLTRADISDFLGLTNETVSRQLTRLRADGVIRIENKRHVTVDSMSRLEQRCG
GRGARQPAFE

Specific function: Promotes the microaerobic and symbiotic induction of fixN, possibly by binding to the FNR consensus binding site upstream of fixN [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH crp-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787595, Length=241, Percent_Identity=24.896265560166, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018490
- InterPro:   IPR000595
- InterPro:   IPR001808
- InterPro:   IPR012318
- InterPro:   IPR014710
- InterPro:   IPR018335
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00027 cNMP_binding; PF00325 Crp [H]

EC number: NA

Molecular weight: Translated: 27356; Mature: 27225

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS51063 HTH_CRP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVRQDIHSSGIPVLCLSCAARLRGVCAALDPNHLVGLAKTSSRHKLEPGVELIADAEAV
CCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCCCCHHHHHHHHHH
DSYSNLLSGVVKLTKCLSDGRQQIVGLRFAPDFLGRPFKVKSTINVEAATSVSLCSFPKA
HHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHCCCEEECCEECCHHHCCHHHHCCCHH
AVERIMKESPGLEHRLLKQTLDELDEALEWMVTLGRKTAPEKVASFLLMIARNMDSSIDP
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
AAGSACFDLPLTRADISDFLGLTNETVSRQLTRLRADGVIRIENKRHVTVDSMSRLEQRC
CCCCCHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCEECHHHHHHHHHHH
GGRGARQPAFE
CCCCCCCCCCC
>Mature Secondary Structure 
TVRQDIHSSGIPVLCLSCAARLRGVCAALDPNHLVGLAKTSSRHKLEPGVELIADAEAV
CCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCCCCHHHHHHHHHH
DSYSNLLSGVVKLTKCLSDGRQQIVGLRFAPDFLGRPFKVKSTINVEAATSVSLCSFPKA
HHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHCCCEEECCEECCHHHCCHHHHCCCHH
AVERIMKESPGLEHRLLKQTLDELDEALEWMVTLGRKTAPEKVASFLLMIARNMDSSIDP
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
AAGSACFDLPLTRADISDFLGLTNETVSRQLTRLRADGVIRIENKRHVTVDSMSRLEQRC
CCCCCHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCEECHHHHHHHHHHH
GGRGARQPAFE
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2175385 [H]