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The map label for this gene is fni

Identifier: 13475331

GI number: 13475331

Start: 5196906

End: 5197961

Strand: Direct

Name: fni

Synonym: mlr6371

Alternate gene names: 13475331

Gene position: 5196906-5197961 (Clockwise)

Preceding gene: 13475330

Following gene: 13475332

Centisome position: 73.86

GC content: 70.64

Gene sequence:

>1056_bases
ATGAGCGATAGCGACAACATCCCGAGCCGGCGCAAGGACGACCATCTGGACATCGTGCTGGATCGGCGAACGGCGCCGGC
CACGGTCGCCGCCGGCTGGGAGTACATCCGTTTCGAACACTGCGCATTGCCCGAGTTGGACCTGACGCAGATCGACCTGC
GCGCCTCGCTGCTGGGCAAGACCATGCGCGCGCCGCTGCTGATCAGCTCCATGACCGGCGGCGTGCTACGCGCCGAGGCC
ATCAACCGGCATCTGAGCGAGGCAGCACAAGCCTTGGGGATCGCCATGTGCGTCGGTTCGCAGCGCGTGAGCCTGCAATC
CCGCAACTCCCAGGGGCTGACGCGCGCGCTGCGCCGCATGGCCCCAGACATTCCCTTGCTGGCTAATATCGGCGCCGCGC
AACTGCGCGAGGCCGACGGCCTGGACCTGGCGTGCCGGGCGGTGGATGCGCTGGAGGCCGATGGACTCATCGTCCATCTC
AATGCGCTGCAGGAAGCGGTACAGCCGGAGGGCGACCGCGACTGGCGCGGCGTCCTGGCGCAGATCGCTCGCGCCGCGCG
CAGCGTGGACGTGCCGATTGTGGCCAAGGAAGTGGGGTCGGGCCTGTCCGCCTCGGTGGCCTGCGCGCTCGTCAAGGCGG
GCGTGGCGGTCATCGATGTCGCCGGCGCCGGCGGCACCAGTTGGGCCGCGGTGGAGGGCGAGCGCGCCCGCGATGCCGCC
GACCGTGCAGTGGCGATGGCGTTCGCCGACTGGGGGATTCCGACCCCGGCCAGCGTGCAGGCGGTACGTCGGGCGCTGCC
AACTGTGAAGCTGATCGCGTCGGGCGGGATCCGCGACGGCGTCGACGTGGCCAAGGCCATCCGCCTGGGCGCGGACATCG
CCGGGCAGGCGGCCGGCGTGCTGCGCGCGGCGACGGTGTCCACCGAGGCGGTTGTCGCGCATTTCGAGATCGTCATCCGC
CAGTTGGCCGTTGCCTGCTTCTGCACCGGCTCGGCTGATCTGGCGGCGTTGCGTCAGGCGCGGTTGTTGCCCTCGGCGCA
TCTGCCCGCCGGTTGA

Upstream 100 bases:

>100_bases
GCGTGCGCCCGCCTGAACGGCGGGATGCGGCTGCGTGCGCGCGCTGCCGTCGGTCCGATCCGATGCAACGCCGTCCCCCG
ATGCGACGGATGGAGCGAGC

Downstream 100 bases:

>100_bases
TGCCGGCGTCGCCCGCACGTGGCGGCGGGCGCCTAGCAGGCTGCTGAATACCTACGCCAAAGATGACTACTGATCCACCT
TGGCGAGGCGGTTCAATGCG

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MSDSDNIPSRRKDDHLDIVLDRRTAPATVAAGWEYIRFEHCALPELDLTQIDLRASLLGKTMRAPLLISSMTGGVLRAEA
INRHLSEAAQALGIAMCVGSQRVSLQSRNSQGLTRALRRMAPDIPLLANIGAAQLREADGLDLACRAVDALEADGLIVHL
NALQEAVQPEGDRDWRGVLAQIARAARSVDVPIVAKEVGSGLSASVACALVKAGVAVIDVAGAGGTSWAAVEGERARDAA
DRAVAMAFADWGIPTPASVQAVRRALPTVKLIASGGIRDGVDVAKAIRLGADIAGQAAGVLRAATVSTEAVVAHFEIVIR
QLAVACFCTGSADLAALRQARLLPSAHLPAG

Sequences:

>Translated_351_residues
MSDSDNIPSRRKDDHLDIVLDRRTAPATVAAGWEYIRFEHCALPELDLTQIDLRASLLGKTMRAPLLISSMTGGVLRAEA
INRHLSEAAQALGIAMCVGSQRVSLQSRNSQGLTRALRRMAPDIPLLANIGAAQLREADGLDLACRAVDALEADGLIVHL
NALQEAVQPEGDRDWRGVLAQIARAARSVDVPIVAKEVGSGLSASVACALVKAGVAVIDVAGAGGTSWAAVEGERARDAA
DRAVAMAFADWGIPTPASVQAVRRALPTVKLIASGGIRDGVDVAKAIRLGADIAGQAAGVLRAATVSTEAVVAHFEIVIR
QLAVACFCTGSADLAALRQARLLPSAHLPAG
>Mature_350_residues
SDSDNIPSRRKDDHLDIVLDRRTAPATVAAGWEYIRFEHCALPELDLTQIDLRASLLGKTMRAPLLISSMTGGVLRAEAI
NRHLSEAAQALGIAMCVGSQRVSLQSRNSQGLTRALRRMAPDIPLLANIGAAQLREADGLDLACRAVDALEADGLIVHLN
ALQEAVQPEGDRDWRGVLAQIARAARSVDVPIVAKEVGSGLSASVACALVKAGVAVIDVAGAGGTSWAAVEGERARDAAD
RAVAMAFADWGIPTPASVQAVRRALPTVKLIASGGIRDGVDVAKAIRLGADIAGQAAGVLRAATVSTEAVVAHFEIVIRQ
LAVACFCTGSADLAALRQARLLPSAHLPAG

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_RHILO (Q989L5)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_106895.1
- ProteinModelPortal:   Q989L5
- GeneID:   1229550
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mlr6371
- NMPDR:   fig|266835.1.peg.4996
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- BRENDA:   5.3.3.2
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 36532; Mature: 36401

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSDNIPSRRKDDHLDIVLDRRTAPATVAAGWEYIRFEHCALPELDLTQIDLRASLLGK
CCCCCCCCCCCCCCCEEEEEECCCCCCCHHCCCHHEEECCCCCCCCCCHHHHHHHHHHHH
TMRAPLLISSMTGGVLRAEAINRHLSEAAQALGIAMCVGSQRVSLQSRNSQGLTRALRRM
HHHCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHH
APDIPLLANIGAAQLREADGLDLACRAVDALEADGLIVHLNALQEAVQPEGDRDWRGVLA
CCCCCHHHCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCHHHHHHH
QIARAARSVDVPIVAKEVGSGLSASVACALVKAGVAVIDVAGAGGTSWAAVEGERARDAA
HHHHHHHCCCCCEEHHHHCCCCHHHHHHHHHHCCEEEEEEECCCCCCEEEECCHHHHHHH
DRAVAMAFADWGIPTPASVQAVRRALPTVKLIASGGIRDGVDVAKAIRLGADIAGQAAGV
HHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHH
LRAATVSTEAVVAHFEIVIRQLAVACFCTGSADLAALRQARLLPSAHLPAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SDSDNIPSRRKDDHLDIVLDRRTAPATVAAGWEYIRFEHCALPELDLTQIDLRASLLGK
CCCCCCCCCCCCCCEEEEEECCCCCCCHHCCCHHEEECCCCCCCCCCHHHHHHHHHHHH
TMRAPLLISSMTGGVLRAEAINRHLSEAAQALGIAMCVGSQRVSLQSRNSQGLTRALRRM
HHHCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHH
APDIPLLANIGAAQLREADGLDLACRAVDALEADGLIVHLNALQEAVQPEGDRDWRGVLA
CCCCCHHHCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCHHHHHHH
QIARAARSVDVPIVAKEVGSGLSASVACALVKAGVAVIDVAGAGGTSWAAVEGERARDAA
HHHHHHHCCCCCEEHHHHCCCCHHHHHHHHHHCCEEEEEEECCCCCCEEEECCHHHHHHH
DRAVAMAFADWGIPTPASVQAVRRALPTVKLIASGGIRDGVDVAKAIRLGADIAGQAAGV
HHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHH
LRAATVSTEAVVAHFEIVIRQLAVACFCTGSADLAALRQARLLPSAHLPAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968