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The map label for this gene is ydfH [C]

Identifier: 13475263

GI number: 13475263

Start: 5109372

End: 5110070

Strand: Reverse

Name: ydfH [C]

Synonym: mll6291

Alternate gene names: 13475263

Gene position: 5110070-5109372 (Counterclockwise)

Preceding gene: 13475270

Following gene: 13475257

Centisome position: 72.63

GC content: 53.36

Gene sequence:

>699_bases
ATGTTGGAACAGAAGAAGCCGCGCTCGAAATATCGCCTTCAGAGGCAGAGCCTACCGGAGGCGCTATCGGAGTCGTTGCG
GGAACGCATTCTCAGTGGCGAGTTCAAAGAGGGCGACCCCCTGATACAAGAAGCGATCGCAGCCGAATACGAATGCAGCC
GAATGCCTGTGCGCGAGGCATTTCGCCAGTTGGAAGCAGCAGGATTGATCGTTTCCAAGATTCACAAGGGTGCTATTGTT
TCGACATTGCCATCCGAACAGATCATGGAATTGTTCGAACTTCGGGCAACGCTGGAGTGCGATATTCTCAGCCGCTCGCT
AGAGCATCTCTCGGACGAAGAGTTGGCTCACTCCGCGCAGATTCTCAAGCGACTCGAAGAGGCATATCACAAGCGGGACA
TTGCCCGAGTAGGCGCTTTGAACTGGGAGTTTCACCGCAGTCTCTATCGGCCCGCGGGACGCATTCAGACACTCGCCATT
CTCCAAGGCATCAATGTCCAGATTGATCGATATATCAGGATTCAGCTACTTTTGACTTCCGGCTTCGAAGAAGCAGAGCG
CGAACATCGCCAAATTCTGAGCATGTGCAAGGAACGCGACCGTCAAGTCGTGGAGTTTATGCGAGGGCACATAATCAGGG
CTGGCCATAACCTTTTGGAAGCACTCAATAAGCGCCGAGTGAACGACCCCGCTGTATAA

Upstream 100 bases:

>100_bases
CACCCTTTTTTGGGATACTCTCGACGAGCCGATCATTAGCACAAGCGAAAGAGGCGGCTTTTCAATTTTGGGTTTTGGGA
TCCAAAAAACGATGGACAAC

Downstream 100 bases:

>100_bases
TCGCACCTCACGGTCAAAGAAGCGCCTGATTGCATCTGTGCATCACAGGCGTTTTGCTTGTTCGCATAGATGATACGTCG
AAGGATGATTTGTCCCTCCC

Product: transcription regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; GntR Family Regulatory Protein; Transcriptional Regulator Gntr Family; Transcription Regulator; Regulatory Protein GntR HTH; GntR-Family Transcriptional Regulator; GntR Domain-Containing Protein; GntR Domain Protein; HTH-Type Transcriptional Regulator; Transcriptional Regulator GntR; GntR Family Regulatory; Transcriptional Regulatory Protein; Regulatory Protein GntR; Biotin Regulatory Protein BioR; GntR Family Transcription Regulator; Transcription Regulator Protein; FCD Domain Protein; Transcriptional Regulator GntR-Family; Regulator PutR For Proline Utilization GntR Family; Regulatory Protein GntR Family; GntR Family Transcription Regulator Protein; Transcription Regulator AsnC; Glycosyltransferase

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MLEQKKPRSKYRLQRQSLPEALSESLRERILSGEFKEGDPLIQEAIAAEYECSRMPVREAFRQLEAAGLIVSKIHKGAIV
STLPSEQIMELFELRATLECDILSRSLEHLSDEELAHSAQILKRLEEAYHKRDIARVGALNWEFHRSLYRPAGRIQTLAI
LQGINVQIDRYIRIQLLLTSGFEEAEREHRQILSMCKERDRQVVEFMRGHIIRAGHNLLEALNKRRVNDPAV

Sequences:

>Translated_232_residues
MLEQKKPRSKYRLQRQSLPEALSESLRERILSGEFKEGDPLIQEAIAAEYECSRMPVREAFRQLEAAGLIVSKIHKGAIV
STLPSEQIMELFELRATLECDILSRSLEHLSDEELAHSAQILKRLEEAYHKRDIARVGALNWEFHRSLYRPAGRIQTLAI
LQGINVQIDRYIRIQLLLTSGFEEAEREHRQILSMCKERDRQVVEFMRGHIIRAGHNLLEALNKRRVNDPAV
>Mature_232_residues
MLEQKKPRSKYRLQRQSLPEALSESLRERILSGEFKEGDPLIQEAIAAEYECSRMPVREAFRQLEAAGLIVSKIHKGAIV
STLPSEQIMELFELRATLECDILSRSLEHLSDEELAHSAQILKRLEEAYHKRDIARVGALNWEFHRSLYRPAGRIQTLAI
LQGINVQIDRYIRIQLLLTSGFEEAEREHRQILSMCKERDRQVVEFMRGHIIRAGHNLLEALNKRRVNDPAV

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26872; Mature: 26872

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEQKKPRSKYRLQRQSLPEALSESLRERILSGEFKEGDPLIQEAIAAEYECSRMPVREA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
FRQLEAAGLIVSKIHKGAIVSTLPSEQIMELFELRATLECDILSRSLEHLSDEELAHSAQ
HHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ILKRLEEAYHKRDIARVGALNWEFHRSLYRPAGRIQTLAILQGINVQIDRYIRIQLLLTS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEHHHEEHHHHHC
GFEEAEREHRQILSMCKERDRQVVEFMRGHIIRAGHNLLEALNKRRVNDPAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLEQKKPRSKYRLQRQSLPEALSESLRERILSGEFKEGDPLIQEAIAAEYECSRMPVREA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
FRQLEAAGLIVSKIHKGAIVSTLPSEQIMELFELRATLECDILSRSLEHLSDEELAHSAQ
HHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ILKRLEEAYHKRDIARVGALNWEFHRSLYRPAGRIQTLAILQGINVQIDRYIRIQLLLTS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEHHHEEHHHHHC
GFEEAEREHRQILSMCKERDRQVVEFMRGHIIRAGHNLLEALNKRRVNDPAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA