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The map label for this gene is yliD [C]

Identifier: 13475262

GI number: 13475262

Start: 5108422

End: 5109264

Strand: Direct

Name: yliD [C]

Synonym: mlr6290

Alternate gene names: 13475262

Gene position: 5108422-5109264 (Clockwise)

Preceding gene: 13475261

Following gene: 13475264

Centisome position: 72.6

GC content: 57.77

Gene sequence:

>843_bases
ATGACGATTTCTATGTCGTGGCGACAAGACAGGCGCCTACCGACTCCTTTGCTGGTGGCCTCAATTTTTGTGCTCGTTGT
TGCATTGGTGTCGTTTTCGGCGCCGATCCTCACCAGCGTTGATCCCTTGTCCATGACGCCGGATGCAAGGCTCAAGCCAC
CTAGCCATAGTCATTTGCTGGGAACCGATATGTTCGGGCGCGACATTCTCGCGCGTGTGCTTTACGGGGGGCAGATTTCG
CTCGTGATCGGATTGGCTACAGCGGCTCTAGCGACAACAATCGGAACGATACTGGGCCTTGTCGCCGGAGCCGGGCAACT
CTCAGACAAGATCTTGATGAGGATCATGGACGGCATGATGGCTATACCCGGGATCCTGCTTGCGATTGCTTTGGCGACGA
TCTTTGGTGGTGGGGTCTTGACCGTGATCGTAGCTTTGGCCATCCCGGAAGTGCCGGGTGTCGCGCGCCTGGCTCGGAGC
TTGACGCTGACACTCCGTGAGCAAGTTTTCGTCGAGGCAGCTCGGTCCTACGGCGCTGGGCCTCTGCGTATTCTGTTCAG
ATACATCCTGCCGAACGCGTTGGCGCCAATCGCTGTGCAGGCCACGTATATCTGCGGCGTGGCGATCCTTTATGAGGCTT
ACCTCAGCTTTGTGGGTGTTGGGGTTCCACCCGAGCACCCGAGTTGGGGCAACATTGTTGCCGAGGGGCGGTCCTTTGCC
CTGATCGCCCCACATATGATCCTCTATCCGAGCGTGCTCATTGCGGTTGTCGTGCTCGCAATCAATCTGATCGGCGATGG
AGCACGGGACATGCTCGATCCGCGATTCGCCTTGCCTGATTGA

Upstream 100 bases:

>100_bases
TGCTAATAAGCTCGTTTGTATATGTTCTCATAAATCTGATGGTCGACCTGTCATATCTGTTTTTCGACCCACGAATTAAA
TACACTTAAGGAGGTAGGCG

Downstream 100 bases:

>100_bases
TCGTCTCGGGAGGGACAAATCATCCTTCGACGTATCATCTATGCGAACAAGCAAAACGCCTGTGATGCACAGATGCAATC
AGGCGCTTCTTTGACCGTGA

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MTISMSWRQDRRLPTPLLVASIFVLVVALVSFSAPILTSVDPLSMTPDARLKPPSHSHLLGTDMFGRDILARVLYGGQIS
LVIGLATAALATTIGTILGLVAGAGQLSDKILMRIMDGMMAIPGILLAIALATIFGGGVLTVIVALAIPEVPGVARLARS
LTLTLREQVFVEAARSYGAGPLRILFRYILPNALAPIAVQATYICGVAILYEAYLSFVGVGVPPEHPSWGNIVAEGRSFA
LIAPHMILYPSVLIAVVVLAINLIGDGARDMLDPRFALPD

Sequences:

>Translated_280_residues
MTISMSWRQDRRLPTPLLVASIFVLVVALVSFSAPILTSVDPLSMTPDARLKPPSHSHLLGTDMFGRDILARVLYGGQIS
LVIGLATAALATTIGTILGLVAGAGQLSDKILMRIMDGMMAIPGILLAIALATIFGGGVLTVIVALAIPEVPGVARLARS
LTLTLREQVFVEAARSYGAGPLRILFRYILPNALAPIAVQATYICGVAILYEAYLSFVGVGVPPEHPSWGNIVAEGRSFA
LIAPHMILYPSVLIAVVVLAINLIGDGARDMLDPRFALPD
>Mature_279_residues
TISMSWRQDRRLPTPLLVASIFVLVVALVSFSAPILTSVDPLSMTPDARLKPPSHSHLLGTDMFGRDILARVLYGGQISL
VIGLATAALATTIGTILGLVAGAGQLSDKILMRIMDGMMAIPGILLAIALATIFGGGVLTVIVALAIPEVPGVARLARSL
TLTLREQVFVEAARSYGAGPLRILFRYILPNALAPIAVQATYICGVAILYEAYLSFVGVGVPPEHPSWGNIVAEGRSFAL
IAPHMILYPSVLIAVVVLAINLIGDGARDMLDPRFALPD

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=271, Percent_Identity=42.4354243542435, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI1787760, Length=264, Percent_Identity=40.9090909090909, Blast_Score=187, Evalue=6e-49,
Organism=Escherichia coli, GI1789964, Length=254, Percent_Identity=40.5511811023622, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1787498, Length=280, Percent_Identity=35.3571428571429, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1789889, Length=236, Percent_Identity=33.8983050847458, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787549, Length=227, Percent_Identity=33.4801762114537, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788505, Length=227, Percent_Identity=27.7533039647577, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29568; Mature: 29437

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTISMSWRQDRRLPTPLLVASIFVLVVALVSFSAPILTSVDPLSMTPDARLKPPSHSHLL
CEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCC
GTDMFGRDILARVLYGGQISLVIGLATAALATTIGTILGLVAGAGQLSDKILMRIMDGMM
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AIPGILLAIALATIFGGGVLTVIVALAIPEVPGVARLARSLTLTLREQVFVEAARSYGAG
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLRILFRYILPNALAPIAVQATYICGVAILYEAYLSFVGVGVPPEHPSWGNIVAEGRSFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
LIAPHMILYPSVLIAVVVLAINLIGDGARDMLDPRFALPD
EECHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC
>Mature Secondary Structure 
TISMSWRQDRRLPTPLLVASIFVLVVALVSFSAPILTSVDPLSMTPDARLKPPSHSHLL
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCC
GTDMFGRDILARVLYGGQISLVIGLATAALATTIGTILGLVAGAGQLSDKILMRIMDGMM
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AIPGILLAIALATIFGGGVLTVIVALAIPEVPGVARLARSLTLTLREQVFVEAARSYGAG
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLRILFRYILPNALAPIAVQATYICGVAILYEAYLSFVGVGVPPEHPSWGNIVAEGRSFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
LIAPHMILYPSVLIAVVVLAINLIGDGARDMLDPRFALPD
EECHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]