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The map label for this gene is yliC [C]

Identifier: 13475261

GI number: 13475261

Start: 5107466

End: 5108410

Strand: Direct

Name: yliC [C]

Synonym: mlr6289

Alternate gene names: 13475261

Gene position: 5107466-5108410 (Clockwise)

Preceding gene: 13475260

Following gene: 13475262

Centisome position: 72.59

GC content: 53.44

Gene sequence:

>945_bases
GTGATCAGGTATCTCATCACCAGAATGCTTTCCATCATACCGGTGATGGGGGTCGTAACCGCCGTTGTTTTCGGGCTGAC
TTATTTGAGCCCGGGAGATGCGGCGGTCGTACTGGCGGGCGACTATGCGTCGCCCGCCCAGATCGCTGCTATTCGAGAGC
GGCTTCACCTGGATGCTCCAATTGTACCCCAGTACTTTCATTGGCTGGGGAGCGTCCTGCGGGGCGATCTCGGAAATTCG
ATCTTTTCTGAACAGCCGGTATTGGCTCTCATCCTCTCGCGAGTCGAACCGACAATCATTCTGGCAATCGCCGCAACTCT
TGTCTCTGTCATCATCGCTGTGCCGTTGGGGCTGCTTGCTGCGCGGAAAAGGGGCGGCATTGCCGATCAACTGGTATCGT
TCTTCGGTATTGCTGGAACGGCAATACCCGCCTTCCTGATTGGCTATTTGCTGATATTTACGTTCGGGGTGTACTTTGGA
TCAATGCCCATCTCGGGGTTCCCTGGGCTCGATAGCGGAGCATGGGAAGTTTTGAGACATGTGCTTCTGCCTGCAACCAT
GTTGGGATTTGCGCAGACCGCGCTGATCACTCGGATCACGAGAGCGAGTGCGATCGAGGTCCTTAACCAGGACTTCATTC
GGGTCGCGCGGGCAAAAGGCCTCGATGAGTTCACAATTATCATGCGGCACTGCCTTAGGCTCATCGCCGTGCCTCTCGTT
ACGATAGTTGGAATGTCGTTTGCCTATATGCTTGGCGGCGTGGTGATCACCGAGACAGTGTTTGCCATCCCCGGGGTTGG
ACGTCTCTTGGTCGATGCCATCCAACACAAGGATGTCCCAGTGATTCAGGGTGTCTTGCTAATAAGCTCGTTTGTATATG
TTCTCATAAATCTGATGGTCGACCTGTCATATCTGTTTTTCGACCCACGAATTAAATACACTTAA

Upstream 100 bases:

>100_bases
CCGACATCGAAGGGTTTAACCCCGAAACGCCTGAAGTGTACTTCTGGAATATCCGGCGCAAGAGCAAGTAGCGCGCCCAA
TCCGCGGCCGAGAGGTTATT

Downstream 100 bases:

>100_bases
GGAGGTAGGCGATGACGATTTCTATGTCGTGGCGACAAGACAGGCGCCTACCGACTCCTTTGCTGGTGGCCTCAATTTTT
GTGCTCGTTGTTGCATTGGT

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MIRYLITRMLSIIPVMGVVTAVVFGLTYLSPGDAAVVLAGDYASPAQIAAIRERLHLDAPIVPQYFHWLGSVLRGDLGNS
IFSEQPVLALILSRVEPTIILAIAATLVSVIIAVPLGLLAARKRGGIADQLVSFFGIAGTAIPAFLIGYLLIFTFGVYFG
SMPISGFPGLDSGAWEVLRHVLLPATMLGFAQTALITRITRASAIEVLNQDFIRVARAKGLDEFTIIMRHCLRLIAVPLV
TIVGMSFAYMLGGVVITETVFAIPGVGRLLVDAIQHKDVPVIQGVLLISSFVYVLINLMVDLSYLFFDPRIKYT

Sequences:

>Translated_314_residues
MIRYLITRMLSIIPVMGVVTAVVFGLTYLSPGDAAVVLAGDYASPAQIAAIRERLHLDAPIVPQYFHWLGSVLRGDLGNS
IFSEQPVLALILSRVEPTIILAIAATLVSVIIAVPLGLLAARKRGGIADQLVSFFGIAGTAIPAFLIGYLLIFTFGVYFG
SMPISGFPGLDSGAWEVLRHVLLPATMLGFAQTALITRITRASAIEVLNQDFIRVARAKGLDEFTIIMRHCLRLIAVPLV
TIVGMSFAYMLGGVVITETVFAIPGVGRLLVDAIQHKDVPVIQGVLLISSFVYVLINLMVDLSYLFFDPRIKYT
>Mature_314_residues
MIRYLITRMLSIIPVMGVVTAVVFGLTYLSPGDAAVVLAGDYASPAQIAAIRERLHLDAPIVPQYFHWLGSVLRGDLGNS
IFSEQPVLALILSRVEPTIILAIAATLVSVIIAVPLGLLAARKRGGIADQLVSFFGIAGTAIPAFLIGYLLIFTFGVYFG
SMPISGFPGLDSGAWEVLRHVLLPATMLGFAQTALITRITRASAIEVLNQDFIRVARAKGLDEFTIIMRHCLRLIAVPLV
TIVGMSFAYMLGGVVITETVFAIPGVGRLLVDAIQHKDVPVIQGVLLISSFVYVLINLMVDLSYLFFDPRIKYT

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=314, Percent_Identity=38.8535031847134, Blast_Score=235, Evalue=2e-63,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=35.207100591716, Blast_Score=220, Evalue=8e-59,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=37.1428571428571, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=32.6984126984127, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=37.1951219512195, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1788504, Length=364, Percent_Identity=31.5934065934066, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1787550, Length=267, Percent_Identity=27.7153558052434, Blast_Score=125, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33955; Mature: 33955

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRYLITRMLSIIPVMGVVTAVVFGLTYLSPGDAAVVLAGDYASPAQIAAIRERLHLDAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
IVPQYFHWLGSVLRGDLGNSIFSEQPVLALILSRVEPTIILAIAATLVSVIIAVPLGLLA
CHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ARKRGGIADQLVSFFGIAGTAIPAFLIGYLLIFTFGVYFGSMPISGFPGLDSGAWEVLRH
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
VLLPATMLGFAQTALITRITRASAIEVLNQDFIRVARAKGLDEFTIIMRHCLRLIAVPLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
TIVGMSFAYMLGGVVITETVFAIPGVGRLLVDAIQHKDVPVIQGVLLISSFVYVLINLMV
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
DLSYLFFDPRIKYT
HHHHHHCCCCCCCC
>Mature Secondary Structure
MIRYLITRMLSIIPVMGVVTAVVFGLTYLSPGDAAVVLAGDYASPAQIAAIRERLHLDAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
IVPQYFHWLGSVLRGDLGNSIFSEQPVLALILSRVEPTIILAIAATLVSVIIAVPLGLLA
CHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ARKRGGIADQLVSFFGIAGTAIPAFLIGYLLIFTFGVYFGSMPISGFPGLDSGAWEVLRH
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
VLLPATMLGFAQTALITRITRASAIEVLNQDFIRVARAKGLDEFTIIMRHCLRLIAVPLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
TIVGMSFAYMLGGVVITETVFAIPGVGRLLVDAIQHKDVPVIQGVLLISSFVYVLINLMV
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
DLSYLFFDPRIKYT
HHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]