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The map label for this gene is xerD [C]

Identifier: 13475206

GI number: 13475206

Start: 5048728

End: 5049426

Strand: Reverse

Name: xerD [C]

Synonym: mll6230

Alternate gene names: 13475206

Gene position: 5049426-5048728 (Counterclockwise)

Preceding gene: 13475207

Following gene: 13475205

Centisome position: 71.76

GC content: 61.23

Gene sequence:

>699_bases
GTGATCGCGCATCTACGAGCATTCCTGCGATATTGCGGGGATCACGGCGAGGCGGCTGGCGGTTTGCATGTCATCGACAT
GCCGCGCGTGTATCGAGGGGAGTTGCCGCCGCGGGCTATGGATTGGACAATGGTACGCCGCCTGCTGGCGTCGATCCGGC
GGCGAGCTGCCCGGGATTGGCGCGACTACGCCATTTTGCATCTCATGGCGTACTACGGTCTCCGACCGTCGGAGGTTGCC
ACCCTTCGCTTGGACTCGATCGACTGGAAAGCGAGAACCTTGCGGGTCGAGCAACGGAAGACCCGATCGGTCCTTGTCCT
GCCGTTGGCCGGACGAACGCTACGGCTCCTGCATCGGTATCTCCAGGTCGGCAGACCGGACAGTGTTTTGCCGCAGTTAT
TCCTGCGAATCCGCAGCCCGATCAAGCCGCTCAAGCATTACGGCGTCATCACGGTCTTCACCTATCGAGCGCAGAAGAGT
GGATTATCGCTCGGTGGCGTGTCTTCGTATTCGCTGCGTCACGCCTTCGCCATGAGGCTGCTTCGGCGCGGTGTCGATGT
CAAGGCGATCGGCGATTTGCTTGGGCATCGCAGCCTCGAAGCGACCTGTGTCTACTTGCGGGCCGACGTCGACATGTTGC
GGAAGGTCGCCTTGCCTGTCCCGGGAATCATGGTTGTCGAGGGAGGCGATCATGCTTGA

Upstream 100 bases:

>100_bases
TACGGGGTGTTCCAGCCGACCACTGCCTGTCCGCCGTAACGGCAGCCGACGTCGAGGCCTTCGTCCAGCTCAAGAGCAAG
GAGAACAATCGCTCCAACAT

Downstream 100 bases:

>100_bases
GACCCTCCATCTGACCCCACTGGATCGCTGGATCGACGCATGGCTGGCGCATCAACGTGCGCTGGGTCGGGCCTACGACA
ACGAAGGATGGATCCTCGGG

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MIAHLRAFLRYCGDHGEAAGGLHVIDMPRVYRGELPPRAMDWTMVRRLLASIRRRAARDWRDYAILHLMAYYGLRPSEVA
TLRLDSIDWKARTLRVEQRKTRSVLVLPLAGRTLRLLHRYLQVGRPDSVLPQLFLRIRSPIKPLKHYGVITVFTYRAQKS
GLSLGGVSSYSLRHAFAMRLLRRGVDVKAIGDLLGHRSLEATCVYLRADVDMLRKVALPVPGIMVVEGGDHA

Sequences:

>Translated_232_residues
MIAHLRAFLRYCGDHGEAAGGLHVIDMPRVYRGELPPRAMDWTMVRRLLASIRRRAARDWRDYAILHLMAYYGLRPSEVA
TLRLDSIDWKARTLRVEQRKTRSVLVLPLAGRTLRLLHRYLQVGRPDSVLPQLFLRIRSPIKPLKHYGVITVFTYRAQKS
GLSLGGVSSYSLRHAFAMRLLRRGVDVKAIGDLLGHRSLEATCVYLRADVDMLRKVALPVPGIMVVEGGDHA
>Mature_232_residues
MIAHLRAFLRYCGDHGEAAGGLHVIDMPRVYRGELPPRAMDWTMVRRLLASIRRRAARDWRDYAILHLMAYYGLRPSEVA
TLRLDSIDWKARTLRVEQRKTRSVLVLPLAGRTLRLLHRYLQVGRPDSVLPQLFLRIRSPIKPLKHYGVITVFTYRAQKS
GLSLGGVSSYSLRHAFAMRLLRRGVDVKAIGDLLGHRSLEATCVYLRADVDMLRKVALPVPGIMVVEGGDHA

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=192, Percent_Identity=29.6875, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790767, Length=153, Percent_Identity=28.1045751633987, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 26370; Mature: 26370

Theoretical pI: Translated: 11.35; Mature: 11.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAHLRAFLRYCGDHGEAAGGLHVIDMPRVYRGELPPRAMDWTMVRRLLASIRRRAARDW
CHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RDYAILHLMAYYGLRPSEVATLRLDSIDWKARTLRVEQRKTRSVLVLPLAGRTLRLLHRY
HHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
LQVGRPDSVLPQLFLRIRSPIKPLKHYGVITVFTYRAQKSGLSLGGVSSYSLRHAFAMRL
HHCCCCCHHHHHHHHHHHCCHHHHHHCCEEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHH
LRRGVDVKAIGDLLGHRSLEATCVYLRADVDMLRKVALPVPGIMVVEGGDHA
HHCCCCHHHHHHHHCCCCHHHEEEEEECCHHHHHHHHCCCCCEEEECCCCCC
>Mature Secondary Structure
MIAHLRAFLRYCGDHGEAAGGLHVIDMPRVYRGELPPRAMDWTMVRRLLASIRRRAARDW
CHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RDYAILHLMAYYGLRPSEVATLRLDSIDWKARTLRVEQRKTRSVLVLPLAGRTLRLLHRY
HHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
LQVGRPDSVLPQLFLRIRSPIKPLKHYGVITVFTYRAQKSGLSLGGVSSYSLRHAFAMRL
HHCCCCCHHHHHHHHHHHCCHHHHHHCCEEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHH
LRRGVDVKAIGDLLGHRSLEATCVYLRADVDMLRKVALPVPGIMVVEGGDHA
HHCCCCHHHHHHHHCCCCHHHEEEEEECCHHHHHHHHCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]