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The map label for this gene is xerD [C]

Identifier: 13475205

GI number: 13475205

Start: 5047758

End: 5048735

Strand: Reverse

Name: xerD [C]

Synonym: mll6229

Alternate gene names: 13475205

Gene position: 5048735-5047758 (Counterclockwise)

Preceding gene: 13475206

Following gene: 13475204

Centisome position: 71.76

GC content: 61.76

Gene sequence:

>978_bases
ATGCTTGAGACCCTCCATCTGACCCCACTGGATCGCTGGATCGACGCATGGCTGGCGCATCAACGTGCGCTGGGTCGGGC
CTACGACAACGAAGGATGGATCCTCGGGCATCTGCGGCGATTCATCGTGTCAAGCGAGGCCGGCGATCTCGACCAAAAGG
GCTTTGATCGCTGGTGTGCTTCCCTTCGCCATTTGTCGCCGACGACCCGGCGTGGCCGACAGTTTGTTGTCCGCAAGCTC
TGTCTCTTCCGAAGACGGGCGGAACCAGGCTGCTTTGTACCGGACTCGATTTACTTCGCGCGCAAGTTGCCGTATCGGCG
GCCGGTCATTCTCGAGCCAGCTCAGGTGTCTCGGATGCTTGCAGCAGCCGACGGCCTGGCGCCTACGACGAACTCGCCGC
TGTTGCCGGCCGTCATGCGGCTGGCCACCATCATCCTATACACCGCCGGTCTGCGGCGTGGAGAGCTGGCACGTCTGACG
CTCGACGACGTCGAGCCGCAATCCGGATTGCTCCGCATTCGTCAATCGAAGTTCCACAAGTCCCGGCTCGTGCCGCTGTC
TCCGGACGCGGCAGGTGCACTGCGCACCTATCTACACCTCCGTCTCGCGCCCTCATTCAATGCCGATCCATCCTCGGCAT
TATTGTGTTGCGGACGAGCTGGTCGACGCGGCTACACCGGGGCCGGATTGGGACAGGCCATCAATCGTCTGTTCGTCACT
GCCGACGTGCGGGACAGCGAAGGTCGCTTGCCGCGCGTCCATGATATTAGACACAGTTTTGGCGTCCAGGCGTTGATACG
CTGGTATCGCGCTGGTGCCGATGTTCAGTCCTGCTTGCCCAGCCTGGCAATCTATATGGGCCATGTCTCGGTCGTATCGA
CCGCCCACTACCTCCACTTCGTACCCACGATGCGGGAACTTGCCAGCAGCCGCTTCGAGGCCGCCTTCGGCAACATCGTG
GTGGAGGCGAAACCATGA

Upstream 100 bases:

>100_bases
AGCCTCGAAGCGACCTGTGTCTACTTGCGGGCCGACGTCGACATGTTGCGGAAGGTCGCCTTGCCTGTCCCGGGAATCAT
GGTTGTCGAGGGAGGCGATC

Downstream 100 bases:

>100_bases
AGGCCTATCAGCCCACAGACCTTGGCCGACCCATCGTCCGCTTCTTCCAGGAATACCTTCCGACGCTGCGTGGCATGAGC
CGTCACACGATCCGAAGTTA

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MLETLHLTPLDRWIDAWLAHQRALGRAYDNEGWILGHLRRFIVSSEAGDLDQKGFDRWCASLRHLSPTTRRGRQFVVRKL
CLFRRRAEPGCFVPDSIYFARKLPYRRPVILEPAQVSRMLAAADGLAPTTNSPLLPAVMRLATIILYTAGLRRGELARLT
LDDVEPQSGLLRIRQSKFHKSRLVPLSPDAAGALRTYLHLRLAPSFNADPSSALLCCGRAGRRGYTGAGLGQAINRLFVT
ADVRDSEGRLPRVHDIRHSFGVQALIRWYRAGADVQSCLPSLAIYMGHVSVVSTAHYLHFVPTMRELASSRFEAAFGNIV
VEAKP

Sequences:

>Translated_325_residues
MLETLHLTPLDRWIDAWLAHQRALGRAYDNEGWILGHLRRFIVSSEAGDLDQKGFDRWCASLRHLSPTTRRGRQFVVRKL
CLFRRRAEPGCFVPDSIYFARKLPYRRPVILEPAQVSRMLAAADGLAPTTNSPLLPAVMRLATIILYTAGLRRGELARLT
LDDVEPQSGLLRIRQSKFHKSRLVPLSPDAAGALRTYLHLRLAPSFNADPSSALLCCGRAGRRGYTGAGLGQAINRLFVT
ADVRDSEGRLPRVHDIRHSFGVQALIRWYRAGADVQSCLPSLAIYMGHVSVVSTAHYLHFVPTMRELASSRFEAAFGNIV
VEAKP
>Mature_325_residues
MLETLHLTPLDRWIDAWLAHQRALGRAYDNEGWILGHLRRFIVSSEAGDLDQKGFDRWCASLRHLSPTTRRGRQFVVRKL
CLFRRRAEPGCFVPDSIYFARKLPYRRPVILEPAQVSRMLAAADGLAPTTNSPLLPAVMRLATIILYTAGLRRGELARLT
LDDVEPQSGLLRIRQSKFHKSRLVPLSPDAAGALRTYLHLRLAPSFNADPSSALLCCGRAGRRGYTGAGLGQAINRLFVT
ADVRDSEGRLPRVHDIRHSFGVQALIRWYRAGADVQSCLPSLAIYMGHVSVVSTAHYLHFVPTMRELASSRFEAAFGNIV
VEAKP

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=223, Percent_Identity=30.9417040358744, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36328; Mature: 36328

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLETLHLTPLDRWIDAWLAHQRALGRAYDNEGWILGHLRRFIVSSEAGDLDQKGFDRWCA
CCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
SLRHLSPTTRRGRQFVVRKLCLFRRRAEPGCFVPDSIYFARKLPYRRPVILEPAQVSRML
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEECHHHHHHHH
AAADGLAPTTNSPLLPAVMRLATIILYTAGLRRGELARLTLDDVEPQSGLLRIRQSKFHK
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
SRLVPLSPDAAGALRTYLHLRLAPSFNADPSSALLCCGRAGRRGYTGAGLGQAINRLFVT
HCCCCCCCCHHHHHHHHHHEEECCCCCCCCCHHEEECCCCCCCCCCCCCHHHHHHHHEEE
ADVRDSEGRLPRVHDIRHSFGVQALIRWYRAGADVQSCLPSLAIYMGHVSVVSTAHYLHF
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VPTMRELASSRFEAAFGNIVVEAKP
HHHHHHHHHHHHHHHHCCEEEEECC
>Mature Secondary Structure
MLETLHLTPLDRWIDAWLAHQRALGRAYDNEGWILGHLRRFIVSSEAGDLDQKGFDRWCA
CCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
SLRHLSPTTRRGRQFVVRKLCLFRRRAEPGCFVPDSIYFARKLPYRRPVILEPAQVSRML
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEECHHHHHHHH
AAADGLAPTTNSPLLPAVMRLATIILYTAGLRRGELARLTLDDVEPQSGLLRIRQSKFHK
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
SRLVPLSPDAAGALRTYLHLRLAPSFNADPSSALLCCGRAGRRGYTGAGLGQAINRLFVT
HCCCCCCCCHHHHHHHHHHEEECCCCCCCCCHHEEECCCCCCCCCCCCCHHHHHHHHEEE
ADVRDSEGRLPRVHDIRHSFGVQALIRWYRAGADVQSCLPSLAIYMGHVSVVSTAHYLHF
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VPTMRELASSRFEAAFGNIVVEAKP
HHHHHHHHHHHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]