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The map label for this gene is xerC [C]

Identifier: 13475204

GI number: 13475204

Start: 5046733

End: 5047761

Strand: Reverse

Name: xerC [C]

Synonym: mll6228

Alternate gene names: 13475204

Gene position: 5047761-5046733 (Counterclockwise)

Preceding gene: 13475205

Following gene: 13475203

Centisome position: 71.74

GC content: 61.32

Gene sequence:

>1029_bases
ATGAAGGCCTATCAGCCCACAGACCTTGGCCGACCCATCGTCCGCTTCTTCCAGGAATACCTTCCGACGCTGCGTGGCAT
GAGCCGTCACACGATCCGAAGTTATCGCGACGGCATGATCCTGTTCCTGGGATTTGCCACGACCGATTGCCGGCGCCCGA
TCGAATCGCTGACGATCGCCGACATCACCGCCGACCGTGTCGGCCGTTTCCTGGCTTCCTTGGAGAGCGAGCGGGGCAAC
AGCATCGCGACCCGGAACACTCGCCTGGCCGCGCTGCATACCTTTGCCCGTTTCCTGATCGCTGAGACCCCGGAGCATAT
GGCCACTCTCCAGCAAGTGCTTGGAATCCCGTTCAAGAGGGGCGCACGTGTGGCTCCGATCGAATATCTGGAGACCACGG
AGGTCGAGGCTTTGCTGGCCGGCATCGATCGAAAGACGCCGGCAGGCAGGCGGGACTACGCCATGTTCTCGCTCATGTTC
AACACCGGCGCGCGCGTCCAGGAGGTCATCGACCTTCGGGTCCGGGACGTTCGCCTGGAGCCGCCCCACCAGGTGCGATT
CACCGGCAAGGGCAACAAGATACGCCTGTGTCCGATCTGGCCCCGCACCGCACAGCTTTTGAAGGAATTGATCCAAAAGC
AGACCAATGACGAAGATCCGGCAGACCAACATATCTTCCTCAACGGCCGAGGTGCTCCGATGACCCGGTTCGGAGTTCGA
TACCTCCTCCAAAAACGCGTTGCCGCCGGCGCCGAAGTTGCGCCAACCCTGAGCGACAAACGGATCCACCCACATTCCCT
CCGGCACACCACGGCGATTCACCTACTCAAGGCCGGAGTCGACTTCGTCACGATCAGCCAATGGCTCGGGCATGCCAGTC
TGAATACCACTATGCGATATGCGCGCGCCGATATTGATCTGAAGCGACAGGCTCTCGCCCAAGTCTTCCCGGAGATACTG
GCGCCACCGAAAGGCGGAGCCTTCGTCTTCCGGGGGGAGGATATCACCGGGTGGCTGCGCCGCCTCTAA

Upstream 100 bases:

>100_bases
TATCGACCGCCCACTACCTCCACTTCGTACCCACGATGCGGGAACTTGCCAGCAGCCGCTTCGAGGCCGCCTTCGGCAAC
ATCGTGGTGGAGGCGAAACC

Downstream 100 bases:

>100_bases
TATTATGTGGAGTTGTCCGACGCTCAACGCGCCACGCGCCGCGCAAAAGTGGCTCCCAGTGAGGGCGACTCCACATCTCT
GCGTACTGCACATGAGTCGA

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MKAYQPTDLGRPIVRFFQEYLPTLRGMSRHTIRSYRDGMILFLGFATTDCRRPIESLTIADITADRVGRFLASLESERGN
SIATRNTRLAALHTFARFLIAETPEHMATLQQVLGIPFKRGARVAPIEYLETTEVEALLAGIDRKTPAGRRDYAMFSLMF
NTGARVQEVIDLRVRDVRLEPPHQVRFTGKGNKIRLCPIWPRTAQLLKELIQKQTNDEDPADQHIFLNGRGAPMTRFGVR
YLLQKRVAAGAEVAPTLSDKRIHPHSLRHTTAIHLLKAGVDFVTISQWLGHASLNTTMRYARADIDLKRQALAQVFPEIL
APPKGGAFVFRGEDITGWLRRL

Sequences:

>Translated_342_residues
MKAYQPTDLGRPIVRFFQEYLPTLRGMSRHTIRSYRDGMILFLGFATTDCRRPIESLTIADITADRVGRFLASLESERGN
SIATRNTRLAALHTFARFLIAETPEHMATLQQVLGIPFKRGARVAPIEYLETTEVEALLAGIDRKTPAGRRDYAMFSLMF
NTGARVQEVIDLRVRDVRLEPPHQVRFTGKGNKIRLCPIWPRTAQLLKELIQKQTNDEDPADQHIFLNGRGAPMTRFGVR
YLLQKRVAAGAEVAPTLSDKRIHPHSLRHTTAIHLLKAGVDFVTISQWLGHASLNTTMRYARADIDLKRQALAQVFPEIL
APPKGGAFVFRGEDITGWLRRL
>Mature_342_residues
MKAYQPTDLGRPIVRFFQEYLPTLRGMSRHTIRSYRDGMILFLGFATTDCRRPIESLTIADITADRVGRFLASLESERGN
SIATRNTRLAALHTFARFLIAETPEHMATLQQVLGIPFKRGARVAPIEYLETTEVEALLAGIDRKTPAGRRDYAMFSLMF
NTGARVQEVIDLRVRDVRLEPPHQVRFTGKGNKIRLCPIWPRTAQLLKELIQKQTNDEDPADQHIFLNGRGAPMTRFGVR
YLLQKRVAAGAEVAPTLSDKRIHPHSLRHTTAIHLLKAGVDFVTISQWLGHASLNTTMRYARADIDLKRQALAQVFPEIL
APPKGGAFVFRGEDITGWLRRL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=316, Percent_Identity=27.8481012658228, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1789261, Length=319, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1790767, Length=177, Percent_Identity=25.9887005649718, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38689; Mature: 38689

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAYQPTDLGRPIVRFFQEYLPTLRGMSRHTIRSYRDGMILFLGFATTDCRRPIESLTIA
CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEECCHHHHCHHHHHHHH
DITADRVGRFLASLESERGNSIATRNTRLAALHTFARFLIAETPEHMATLQQVLGIPFKR
HHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
GARVAPIEYLETTEVEALLAGIDRKTPAGRRDYAMFSLMFNTGARVQEVIDLRVRDVRLE
CCEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHEEECC
PPHQVRFTGKGNKIRLCPIWPRTAQLLKELIQKQTNDEDPADQHIFLNGRGAPMTRFGVR
CCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHH
YLLQKRVAAGAEVAPTLSDKRIHPHSLRHTTAIHLLKAGVDFVTISQWLGHASLNTTMRY
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHCCCHHHHHHHH
ARADIDLKRQALAQVFPEILAPPKGGAFVFRGEDITGWLRRL
HHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCC
>Mature Secondary Structure
MKAYQPTDLGRPIVRFFQEYLPTLRGMSRHTIRSYRDGMILFLGFATTDCRRPIESLTIA
CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEECCHHHHCHHHHHHHH
DITADRVGRFLASLESERGNSIATRNTRLAALHTFARFLIAETPEHMATLQQVLGIPFKR
HHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
GARVAPIEYLETTEVEALLAGIDRKTPAGRRDYAMFSLMFNTGARVQEVIDLRVRDVRLE
CCEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHEEECC
PPHQVRFTGKGNKIRLCPIWPRTAQLLKELIQKQTNDEDPADQHIFLNGRGAPMTRFGVR
CCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHH
YLLQKRVAAGAEVAPTLSDKRIHPHSLRHTTAIHLLKAGVDFVTISQWLGHASLNTTMRY
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHCCCHHHHHHHH
ARADIDLKRQALAQVFPEILAPPKGGAFVFRGEDITGWLRRL
HHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]