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The map label for this gene is scpB [H]

Identifier: 13475179

GI number: 13475179

Start: 5017956

End: 5018678

Strand: Direct

Name: scpB [H]

Synonym: mlr6199

Alternate gene names: 13475179

Gene position: 5017956-5018678 (Clockwise)

Preceding gene: 13475178

Following gene: 13475180

Centisome position: 71.32

GC content: 65.28

Gene sequence:

>723_bases
ATGAGCCAAGCCTCCGTTCGCCGCAAGCCAAACGAGCAGCCGGCGCTGCTCGACACCGAGCTCGAGCACCTGCCGCCGGA
ATTGCGCTGGCGCGAGTGGATGGGGCGCGTCGAAGCCGTGATCTTTGCGGCAAATGAGCCGGTGCCGCGCGAGATGCTGG
CGCGCGTCGTGGGGAAGAACTGTAATCTCGACCTGGTCATCGACGACATCCGCACCGAGCTTGCCGGCCGCCCTTATGAG
CTGGTGTCGGTCGCCGGCGGCTGGCAGCACCGAACCAAAAAGGTGTTTGGCGACGTCATCCACGCCGCCTTCGGCCAGCA
GGGCGCCGACGGGTCAAAAGAACTGTCGCAGTCGGAGGCGCTTGTCCTCATGTGCATCGCCTATTTCCAGCCGATCACCC
GAGGCGAGCTGTCATCCTTCTTCGGCAAGGAGGTGTCGCGCGATCTGATCGGCGTGCTGCGCGCGCAGGAGCTCATTGCC
TCGGGGCCGCGCAGCCCGCGGCCGGGCGCGCCCTACACCTATGTGACGACCAAAAATTTCCTGTCGCAGTTCGGGCTCGA
CACGCTGCGGCAGCTGCCGGATTTCGAGGCGCTCGAGGATGCTGGCCTGCTGTCGAAGGAGAAGTTGTTGGCTGGCGGCA
TCCCGGCACTTGCCGCGGGCGAGGATATCGCGGACGACGAGGCTCAGTCCGATGATGAGGCTGAGATGGTGGACGAGGGG
TAG

Upstream 100 bases:

>100_bases
CGCGCTTTGCGGCGCGACGGCTGTTCGAGCGGCTGCAACACCTCGATGCCGTGCGCGAGCTGTCGGGCCGCACCAGCTTC
CGGCTGTTTGGGCTGTAGCG

Downstream 100 bases:

>100_bases
GTCGCCGCCGTGACCGACCTGCCAAAGAAAGGTTCCAGCACTACGCCGCATTCATCGCGGCCAGAAGTTGAGGCCCCATG
CGGAAGACAAAATGCGTAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSQASVRRKPNEQPALLDTELEHLPPELRWREWMGRVEAVIFAANEPVPREMLARVVGKNCNLDLVIDDIRTELAGRPYE
LVSVAGGWQHRTKKVFGDVIHAAFGQQGADGSKELSQSEALVLMCIAYFQPITRGELSSFFGKEVSRDLIGVLRAQELIA
SGPRSPRPGAPYTYVTTKNFLSQFGLDTLRQLPDFEALEDAGLLSKEKLLAGGIPALAAGEDIADDEAQSDDEAEMVDEG

Sequences:

>Translated_240_residues
MSQASVRRKPNEQPALLDTELEHLPPELRWREWMGRVEAVIFAANEPVPREMLARVVGKNCNLDLVIDDIRTELAGRPYE
LVSVAGGWQHRTKKVFGDVIHAAFGQQGADGSKELSQSEALVLMCIAYFQPITRGELSSFFGKEVSRDLIGVLRAQELIA
SGPRSPRPGAPYTYVTTKNFLSQFGLDTLRQLPDFEALEDAGLLSKEKLLAGGIPALAAGEDIADDEAQSDDEAEMVDEG
>Mature_239_residues
SQASVRRKPNEQPALLDTELEHLPPELRWREWMGRVEAVIFAANEPVPREMLARVVGKNCNLDLVIDDIRTELAGRPYEL
VSVAGGWQHRTKKVFGDVIHAAFGQQGADGSKELSQSEALVLMCIAYFQPITRGELSSFFGKEVSRDLIGVLRAQELIAS
GPRSPRPGAPYTYVTTKNFLSQFGLDTLRQLPDFEALEDAGLLSKEKLLAGGIPALAAGEDIADDEAQSDDEAEMVDEG

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 26350; Mature: 26219

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQASVRRKPNEQPALLDTELEHLPPELRWREWMGRVEAVIFAANEPVPREMLARVVGKN
CCCCCCCCCCCCCCCEECCHHHHCCHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCC
CNLDLVIDDIRTELAGRPYELVSVAGGWQHRTKKVFGDVIHAAFGQQGADGSKELSQSEA
CCEEEEHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LVLMCIAYFQPITRGELSSFFGKEVSRDLIGVLRAQELIASGPRSPRPGAPYTYVTTKNF
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHH
LSQFGLDTLRQLPDFEALEDAGLLSKEKLLAGGIPALAAGEDIADDEAQSDDEAEMVDEG
HHHHCHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
SQASVRRKPNEQPALLDTELEHLPPELRWREWMGRVEAVIFAANEPVPREMLARVVGKN
CCCCCCCCCCCCCCEECCHHHHCCHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCC
CNLDLVIDDIRTELAGRPYELVSVAGGWQHRTKKVFGDVIHAAFGQQGADGSKELSQSEA
CCEEEEHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LVLMCIAYFQPITRGELSSFFGKEVSRDLIGVLRAQELIASGPRSPRPGAPYTYVTTKNF
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHH
LSQFGLDTLRQLPDFEALEDAGLLSKEKLLAGGIPALAAGEDIADDEAQSDDEAEMVDEG
HHHHCHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]