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The map label for this gene is nodC

Identifier: 13475150

GI number: 13475150

Start: 4987591

End: 4988865

Strand: Direct

Name: nodC

Synonym: mlr6163

Alternate gene names: 13475150

Gene position: 4987591-4988865 (Clockwise)

Preceding gene: 13475149

Following gene: 13475151

Centisome position: 70.89

GC content: 57.57

Gene sequence:

>1275_bases
ATGAACCTATTTGCCTCAGCCAGTACTGTTGCCATCTGCTCTTACGCGCTGCTGTCGACCGTCTATAAAACCGCGCAGGT
CTTTTATACCCTGCCTACAAACGTACCGCCGACCTCGGGCGACCCGCCCAGCGGTGAGCCTTGGCCGAGCGTCGATGTCA
TTATCCCGTGCTACAACGAGGCGCCTCGCACCCTCTCGGACTGCCTGGCTTCCATTGCAAGTCAGGACTACGCCGGCAAA
CTGCAGGTCTATGTTGTTGATGACGGTTCTGCAAACCGCGATGCCCTCGTGGGTGTACACGAGGAATACGCGGGCGACCC
GAGGTTCAACTTCGTTGCGCTCCCAAAGAATGTCGGAAAGCGCAAGGCGCAGATTGCCGCCATTCGCCGCTCGTGCGGAG
ATTTGGTGCTGAATGTAGATTCGGACACGATACTCGCCCCGGACGTCATCACCAGGCTTGCGCTAAAGATGCAAGATCAA
GCGGTCGGCGCCGCCATGGGCCAGTTGGCGGCTAGCAATCGCAGTGAAACTTGGCTGACGCGGTTGATCGACATGGAATA
CTGGCTCGCCTGCAACGAAGAGCGCGCAGCGCAGGCTCGGTTCGGTGCCGTCATGTGTTGCTGCGGTCCGTGTGCCATGT
ACCGGCGATCCGCGCTTGTTTCGCTGCTGGATCAGTACGAGACGCAGCGCTTTCGAGGGAAGCCGAGCGACTTCGGCGAG
GACCGCCACCTTACGATCCTGATGCTGAAAGCAGGCTTTCGAACAGAGTATGTCCCGGAGGCCGTCGCGGCAACAGTCGT
TCCCAACAGCATGGGTCCCTATCTGCGCCAACAGCTTCGCTGGGCCCGGAGCACTTTCCGTGACACGTTGCTGGCGTTCC
AACTGCTGCGCGGCCTTAATATTTATCTCACATTGGACGTGATTGGCCAGAATATTGGCCCATTATTGCTCTCTTTGTCG
ATTCTGGCGGGGCTCGCGCAATTCGTAACGACAGGTACTGTGCCTTGGACGGCATGCCTGATGATTGCAGCCATGACTAT
AGTTCGCTGCAGCGTGGCAGCGTTTCGTGCGCGCCAACTTCGATTTCTCGGGTTCTCGCTCCACACACTCATCAACATCT
TTCTCTTGCTACCTTTGAAAGCATACGCGCTGTGTACATTAAGCAACAGCGATTGGTTGTCGCGAAGCTCTGCGGCCAAT
GTGCAAGACACCGGCGACGCCCTTCCAAAGCCAAACCTGGTGGGATCTGACGCCGCTTACAGCGAACAGCAATAG

Upstream 100 bases:

>100_bases
GCGACCCGCCCCCATGGCGTTGATCGAGCTGATTCCAGCATTGGCCGCGGTTTTACTATCCGCCCGCTTCCCTCAAATTC
ACTGAAAAATCTGACATCTC

Downstream 100 bases:

>100_bases
TTACTTGATCGCAGGTAGAAGAGTTTTGAGCCAGGACCAGAAACATCAAGTGTTGAAGCGTAAGTTGGGCCCAGAGGATT
TGCGGCGGCTCGAGACTCCT

Product: N-acetylglucosaminyltransferase, nodulation protein nodC

Products: NA

Alternate protein names: Nodulation protein C

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MNLFASASTVAICSYALLSTVYKTAQVFYTLPTNVPPTSGDPPSGEPWPSVDVIIPCYNEAPRTLSDCLASIASQDYAGK
LQVYVVDDGSANRDALVGVHEEYAGDPRFNFVALPKNVGKRKAQIAAIRRSCGDLVLNVDSDTILAPDVITRLALKMQDQ
AVGAAMGQLAASNRSETWLTRLIDMEYWLACNEERAAQARFGAVMCCCGPCAMYRRSALVSLLDQYETQRFRGKPSDFGE
DRHLTILMLKAGFRTEYVPEAVAATVVPNSMGPYLRQQLRWARSTFRDTLLAFQLLRGLNIYLTLDVIGQNIGPLLLSLS
ILAGLAQFVTTGTVPWTACLMIAAMTIVRCSVAAFRARQLRFLGFSLHTLINIFLLLPLKAYALCTLSNSDWLSRSSAAN
VQDTGDALPKPNLVGSDAAYSEQQ

Sequences:

>Translated_424_residues
MNLFASASTVAICSYALLSTVYKTAQVFYTLPTNVPPTSGDPPSGEPWPSVDVIIPCYNEAPRTLSDCLASIASQDYAGK
LQVYVVDDGSANRDALVGVHEEYAGDPRFNFVALPKNVGKRKAQIAAIRRSCGDLVLNVDSDTILAPDVITRLALKMQDQ
AVGAAMGQLAASNRSETWLTRLIDMEYWLACNEERAAQARFGAVMCCCGPCAMYRRSALVSLLDQYETQRFRGKPSDFGE
DRHLTILMLKAGFRTEYVPEAVAATVVPNSMGPYLRQQLRWARSTFRDTLLAFQLLRGLNIYLTLDVIGQNIGPLLLSLS
ILAGLAQFVTTGTVPWTACLMIAAMTIVRCSVAAFRARQLRFLGFSLHTLINIFLLLPLKAYALCTLSNSDWLSRSSAAN
VQDTGDALPKPNLVGSDAAYSEQQ
>Mature_424_residues
MNLFASASTVAICSYALLSTVYKTAQVFYTLPTNVPPTSGDPPSGEPWPSVDVIIPCYNEAPRTLSDCLASIASQDYAGK
LQVYVVDDGSANRDALVGVHEEYAGDPRFNFVALPKNVGKRKAQIAAIRRSCGDLVLNVDSDTILAPDVITRLALKMQDQ
AVGAAMGQLAASNRSETWLTRLIDMEYWLACNEERAAQARFGAVMCCCGPCAMYRRSALVSLLDQYETQRFRGKPSDFGE
DRHLTILMLKAGFRTEYVPEAVAATVVPNSMGPYLRQQLRWARSTFRDTLLAFQLLRGLNIYLTLDVIGQNIGPLLLSLS
ILAGLAQFVTTGTVPWTACLMIAAMTIVRCSVAAFRARQLRFLGFSLHTLINIFLLLPLKAYALCTLSNSDWLSRSSAAN
VQDTGDALPKPNLVGSDAAYSEQQ

Specific function: Involved in the synthesis of Nod factor, a sulfated N- acyl-beta-1,4-tetrasaccharide of N-acetylglucosamine which initiates a series of events in the host plant species leading eventually to nodulation

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nodC/HAS family

Homologues:

Organism=Homo sapiens, GI20302153, Length=388, Percent_Identity=29.1237113402062, Blast_Score=153, Evalue=3e-37,
Organism=Homo sapiens, GI4885391, Length=387, Percent_Identity=27.6485788113695, Blast_Score=146, Evalue=4e-35,
Organism=Homo sapiens, GI167466171, Length=410, Percent_Identity=28.5365853658537, Blast_Score=124, Evalue=2e-28,
Organism=Escherichia coli, GI1787259, Length=238, Percent_Identity=25.2100840336134, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI86561407, Length=163, Percent_Identity=29.4478527607362, Blast_Score=75, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6319497, Length=238, Percent_Identity=25.6302521008403, Blast_Score=82, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24668460, Length=173, Percent_Identity=31.2138728323699, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221513547, Length=173, Percent_Identity=31.2138728323699, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NODC_RHILO (P17862)

Other databases:

- EMBL:   X52958
- EMBL:   BA000012
- EMBL:   L06241
- PIR:   S12793
- RefSeq:   NP_106714.1
- ProteinModelPortal:   P17862
- GeneID:   1229369
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mlr6163
- NMPDR:   fig|266835.1.peg.4815
- HOGENOM:   HBG334849
- OMA:   LDQYETQ
- ProtClustDB:   CLSK864445
- GO:   GO:0009877
- InterPro:   IPR001173

Pfam domain/function: PF00535 Glycos_transf_2

EC number: NA

Molecular weight: Translated: 46304; Mature: 46304

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLFASASTVAICSYALLSTVYKTAQVFYTLPTNVPPTSGDPPSGEPWPSVDVIIPCYNE
CCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCC
APRTLSDCLASIASQDYAGKLQVYVVDDGSANRDALVGVHEEYAGDPRFNFVALPKNVGK
CCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEEEHHHHCCCCCEEEEECCHHCCH
RKAQIAAIRRSCGDLVLNVDSDTILAPDVITRLALKMQDQAVGAAMGQLAASNRSETWLT
HHHHHHHHHHHHCCEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RLIDMEYWLACNEERAAQARFGAVMCCCGPCAMYRRSALVSLLDQYETQRFRGKPSDFGE
HHHHHHHHEECCHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DRHLTILMLKAGFRTEYVPEAVAATVVPNSMGPYLRQQLRWARSTFRDTLLAFQLLRGLN
CCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IYLTLDVIGQNIGPLLLSLSILAGLAQFVTTGTVPWTACLMIAAMTIVRCSVAAFRARQL
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RFLGFSLHTLINIFLLLPLKAYALCTLSNSDWLSRSSAANVQDTGDALPKPNLVGSDAAY
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
SEQQ
CCCC
>Mature Secondary Structure
MNLFASASTVAICSYALLSTVYKTAQVFYTLPTNVPPTSGDPPSGEPWPSVDVIIPCYNE
CCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCC
APRTLSDCLASIASQDYAGKLQVYVVDDGSANRDALVGVHEEYAGDPRFNFVALPKNVGK
CCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEEEHHHHCCCCCEEEEECCHHCCH
RKAQIAAIRRSCGDLVLNVDSDTILAPDVITRLALKMQDQAVGAAMGQLAASNRSETWLT
HHHHHHHHHHHHCCEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RLIDMEYWLACNEERAAQARFGAVMCCCGPCAMYRRSALVSLLDQYETQRFRGKPSDFGE
HHHHHHHHEECCHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DRHLTILMLKAGFRTEYVPEAVAATVVPNSMGPYLRQQLRWARSTFRDTLLAFQLLRGLN
CCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IYLTLDVIGQNIGPLLLSLSILAGLAQFVTTGTVPWTACLMIAAMTIVRCSVAAFRARQL
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RFLGFSLHTLINIFLLLPLKAYALCTLSNSDWLSRSSAANVQDTGDALPKPNLVGSDAAY
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
SEQQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2251130; 11214968; 8850088