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The map label for this gene is cspA [H]

Identifier: 13475110

GI number: 13475110

Start: 4951975

End: 4952181

Strand: Direct

Name: cspA [H]

Synonym: mlr6118

Alternate gene names: 13475110

Gene position: 4951975-4952181 (Clockwise)

Preceding gene: 13475109

Following gene: 13475119

Centisome position: 70.38

GC content: 57.0

Gene sequence:

>207_bases
GTGGAGAGCGAGGGCACGGTCAAGTGGTACAATCCCCAAAAGGGCTTCGGCTTCATTGCTCCTGAAAACGGTGAGAAGGA
CATCTTCGTTCATGCCACCGCGCTGACCCGCTCAGGACTGAGCATGCTGATGGAGGGTCAGAAGGTGTTTGTCCAATGCG
GGCAGGGCAAGAAAGGCCTGGAAGTTCGGAGCATTCGCCTCGCTTAG

Upstream 100 bases:

>100_bases
TCATCAGGTCGCGCAAGTGCTGGAGGTCAGCGATCAGACCGCGAGAACTCAGCTACATACGCGTCGCACTGGAGAGTCCA
CCGCCGGGACGAGTGCCCAG

Downstream 100 bases:

>100_bases
AGCCAAATGCGTTGGCCTACCAAGATTGCGCCTCAGACAAAGAAAAAGCCCGCTACCGGGAGGAGGTGGCAGCGGGCTCG
ATTTAGAATGAGACGCGGGA

Product: cold-shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MESEGTVKWYNPQKGFGFIAPENGEKDIFVHATALTRSGLSMLMEGQKVFVQCGQGKKGLEVRSIRLA

Sequences:

>Translated_68_residues
MESEGTVKWYNPQKGFGFIAPENGEKDIFVHATALTRSGLSMLMEGQKVFVQCGQGKKGLEVRSIRLA
>Mature_68_residues
MESEGTVKWYNPQKGFGFIAPENGEKDIFVHATALTRSGLSMLMEGQKVFVQCGQGKKGLEVRSIRLA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=46.7741935483871, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1789979, Length=55, Percent_Identity=52.7272727272727, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI2367114, Length=55, Percent_Identity=50.9090909090909, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1787839, Length=55, Percent_Identity=50.9090909090909, Blast_Score=63, Evalue=3e-12,
Organism=Escherichia coli, GI1788126, Length=56, Percent_Identity=50, Blast_Score=63, Evalue=4e-12,
Organism=Escherichia coli, GI1787834, Length=55, Percent_Identity=49.0909090909091, Blast_Score=62, Evalue=7e-12,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=46.7741935483871, Blast_Score=59, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7503; Mature: 7503

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESEGTVKWYNPQKGFGFIAPENGEKDIFVHATALTRSGLSMLMEGQKVFVQCGQGKKGL
CCCCCCEEEECCCCCEEEECCCCCCCEEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCC
EVRSIRLA
EEEEEEEC
>Mature Secondary Structure
MESEGTVKWYNPQKGFGFIAPENGEKDIFVHATALTRSGLSMLMEGQKVFVQCGQGKKGL
CCCCCCEEEECCCCCEEEECCCCCCCEEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCC
EVRSIRLA
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]