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The map label for this gene is ybfI [H]

Identifier: 13475119

GI number: 13475119

Start: 4960674

End: 4961549

Strand: Direct

Name: ybfI [H]

Synonym: mlr6129

Alternate gene names: 13475119

Gene position: 4960674-4961549 (Clockwise)

Preceding gene: 13475110

Following gene: 13475120

Centisome position: 70.5

GC content: 63.24

Gene sequence:

>876_bases
GTGGCCGATACCGCCATAGAATGCGGCGAAAAGGCGCGCGGCCGTTCTGAACCTCCGGGCCGACCGCCGCGCAATCGTGC
GGTGATGAAGCACTCCGATGTCCTTGGCGGGCTCGATTACCTGGCGGCGGATTATCACCGGCAGGATTTCTCCAAGCATA
TCCACAACGAGTATCTGATCGGGCTGATCGAGCGAGGCATCCATGATGTCTGGTGCCGAGGTGAGGTTTGGCACGCCGGT
AGCGGCACGGTCGCGACCTTCGCGCCCGGCGAACCGCATTTCGGGGGTGCTGGTGACGATCTTGGCTGGAGCCAGAAAAT
CTTCTACATGCCCGAAGGCCTTATCCGGCAAGTCCTTGGAGACAGCGGCCAAAACGAACCCGGAACGATCGACTTCAGGA
GCCCGTTCCAGGAGAATGCGGTCGTTGCGCACGGCCTCGGCACGCTATGGCGCCTGCTTGAACATGGGCGTAGCTCGGCA
CTGGAGATCGAGGAGTATCTGATCCGTTTCCTGCCCCACGTCTTCGCACAGGCCGGCGGGTCGCGCGTTGCAGGGCCAAA
ATTCGTGCCATCGAGGTTCCGCGACGTATGTGACTTCATCCATGCCCACTTTGACGAAGTTCTGCAGCTCGCCGCCCTGG
CCGCCCTCGCCGGATGCTCCAAGGCGACGTTGATCGATGGCTTCAAGGCGCATTTCGGGTTGCCCCCCACCCGTTACCTG
ATCCAGGTCCGCATCGACGAGGCGCGACGGCTGCTGAGGCGAGGCCAGCACGTCGCCGATGTCGCCGTCGCGGTCGGGTT
CGCGGACCAGAGCCACCTGACCCGGCACTTCAAGGCGGTGTTGGGGGTGACGCCGGCGCGTTACCTCTCGGTTTGA

Upstream 100 bases:

>100_bases
CAGCAGGCCCCTCTTCGGGCGGCAATTAATCCTGCTTCGGTTTGAAATTCGCGACGTGTGCACGATATCGTTGTGACGAC
CGACCTGGATTGATCATCAA

Downstream 100 bases:

>100_bases
ATATCGTTCAATAAAGCGCGCGGCGAACCGTCTAGCTTGGACGCTCAATGGATGAAAAGAGCGTCAGACCATGAACGAAA
GCAAGCAGACCCGCCCCCGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MADTAIECGEKARGRSEPPGRPPRNRAVMKHSDVLGGLDYLAADYHRQDFSKHIHNEYLIGLIERGIHDVWCRGEVWHAG
SGTVATFAPGEPHFGGAGDDLGWSQKIFYMPEGLIRQVLGDSGQNEPGTIDFRSPFQENAVVAHGLGTLWRLLEHGRSSA
LEIEEYLIRFLPHVFAQAGGSRVAGPKFVPSRFRDVCDFIHAHFDEVLQLAALAALAGCSKATLIDGFKAHFGLPPTRYL
IQVRIDEARRLLRRGQHVADVAVAVGFADQSHLTRHFKAVLGVTPARYLSV

Sequences:

>Translated_291_residues
MADTAIECGEKARGRSEPPGRPPRNRAVMKHSDVLGGLDYLAADYHRQDFSKHIHNEYLIGLIERGIHDVWCRGEVWHAG
SGTVATFAPGEPHFGGAGDDLGWSQKIFYMPEGLIRQVLGDSGQNEPGTIDFRSPFQENAVVAHGLGTLWRLLEHGRSSA
LEIEEYLIRFLPHVFAQAGGSRVAGPKFVPSRFRDVCDFIHAHFDEVLQLAALAALAGCSKATLIDGFKAHFGLPPTRYL
IQVRIDEARRLLRRGQHVADVAVAVGFADQSHLTRHFKAVLGVTPARYLSV
>Mature_290_residues
ADTAIECGEKARGRSEPPGRPPRNRAVMKHSDVLGGLDYLAADYHRQDFSKHIHNEYLIGLIERGIHDVWCRGEVWHAGS
GTVATFAPGEPHFGGAGDDLGWSQKIFYMPEGLIRQVLGDSGQNEPGTIDFRSPFQENAVVAHGLGTLWRLLEHGRSSAL
EIEEYLIRFLPHVFAQAGGSRVAGPKFVPSRFRDVCDFIHAHFDEVLQLAALAALAGCSKATLIDGFKAHFGLPPTRYLI
QVRIDEARRLLRRGQHVADVAVAVGFADQSHLTRHFKAVLGVTPARYLSV

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32074; Mature: 31943

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTAIECGEKARGRSEPPGRPPRNRAVMKHSDVLGGLDYLAADYHRQDFSKHIHNEYLI
CCCCHHHHCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIERGIHDVWCRGEVWHAGSGTVATFAPGEPHFGGAGDDLGWSQKIFYMPEGLIRQVLG
HHHHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHC
DSGQNEPGTIDFRSPFQENAVVAHGLGTLWRLLEHGRSSALEIEEYLIRFLPHVFAQAGG
CCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
SRVAGPKFVPSRFRDVCDFIHAHFDEVLQLAALAALAGCSKATLIDGFKAHFGLPPTRYL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHEE
IQVRIDEARRLLRRGQHVADVAVAVGFADQSHLTRHFKAVLGVTPARYLSV
EEEEHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCC
>Mature Secondary Structure 
ADTAIECGEKARGRSEPPGRPPRNRAVMKHSDVLGGLDYLAADYHRQDFSKHIHNEYLI
CCCHHHHCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIERGIHDVWCRGEVWHAGSGTVATFAPGEPHFGGAGDDLGWSQKIFYMPEGLIRQVLG
HHHHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHC
DSGQNEPGTIDFRSPFQENAVVAHGLGTLWRLLEHGRSSALEIEEYLIRFLPHVFAQAGG
CCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
SRVAGPKFVPSRFRDVCDFIHAHFDEVLQLAALAALAGCSKATLIDGFKAHFGLPPTRYL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHEE
IQVRIDEARRLLRRGQHVADVAVAVGFADQSHLTRHFKAVLGVTPARYLSV
EEEEHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]