Click here to switch to the map view.

The map label for this gene is 13475043

Identifier: 13475043

GI number: 13475043

Start: 4879686

End: 4880027

Strand: Reverse

Name: 13475043

Synonym: mll6040

Alternate gene names: NA

Gene position: 4880027-4879686 (Counterclockwise)

Preceding gene: 13475044

Following gene: 13475042

Centisome position: 69.36

GC content: 54.39

Gene sequence:

>342_bases
ATGAAGAAACATCAATCCACCGCATTGGGCCGAAGCATGGCACGCTTCTTTCAAGAATATCTTCCCGCTCTCCGCGGCAT
GAGCCATCATACGATCCAAAGCTATCGCGACACGATGGTGCTGTTCCTGCGATTTGCAGCGGCAGAGACCAATGGATCCG
TTGAAAGCATCGACGTCTCCGACATCAATGCCGACAGGATCGGCAGCTTTCTCACGTCACTTGAGGTCGAGCGTGGCAAC
AGCATTGCCACCCGCAATGCAAGGCTGGCGGCGATGCATACCTTTGCGCGGTTCCTATCTCGGAGCATCCCGAATATATG
GATACCCTGCAACTGGTGGTGA

Upstream 100 bases:

>100_bases
TGTCGACGGCATGTTATCTGCACTTCCTTCCAAAGCAGAGAGAGATCGCCAGCGACCGCTTTGAAGGGGCTTTCGGCGGT
CTCGTCAGCGAGGTTGTGGC

Downstream 100 bases:

>100_bases
CACTTCCCTTCAAGAGGGGCGCGCGGGTGGCACCTGTCGAATATCTCGAAGAGCCCGAAATCAAGAGCGTGCTGGCGCGT
ATCGACCGCCGCACGCCTTC

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MKKHQSTALGRSMARFFQEYLPALRGMSHHTIQSYRDTMVLFLRFAAAETNGSVESIDVSDINADRIGSFLTSLEVERGN
SIATRNARLAAMHTFARFLSRSIPNIWIPCNWW

Sequences:

>Translated_113_residues
MKKHQSTALGRSMARFFQEYLPALRGMSHHTIQSYRDTMVLFLRFAAAETNGSVESIDVSDINADRIGSFLTSLEVERGN
SIATRNARLAAMHTFARFLSRSIPNIWIPCNWW
>Mature_113_residues
MKKHQSTALGRSMARFFQEYLPALRGMSHHTIQSYRDTMVLFLRFAAAETNGSVESIDVSDINADRIGSFLTSLEVERGN
SIATRNARLAAMHTFARFLSRSIPNIWIPCNWW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 12893; Mature: 12893

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHQSTALGRSMARFFQEYLPALRGMSHHTIQSYRDTMVLFLRFAAAETNGSVESIDVS
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
DINADRIGSFLTSLEVERGNSIATRNARLAAMHTFARFLSRSIPNIWIPCNWW
CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
>Mature Secondary Structure
MKKHQSTALGRSMARFFQEYLPALRGMSHHTIQSYRDTMVLFLRFAAAETNGSVESIDVS
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
DINADRIGSFLTSLEVERGNSIATRNARLAAMHTFARFLSRSIPNIWIPCNWW
CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]