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The map label for this gene is xerD [C]

Identifier: 13475042

GI number: 13475042

Start: 4878997

End: 4879710

Strand: Reverse

Name: xerD [C]

Synonym: mll6039

Alternate gene names: 13475042

Gene position: 4879710-4878997 (Counterclockwise)

Preceding gene: 13475043

Following gene: 13475037

Centisome position: 69.35

GC content: 57.7

Gene sequence:

>714_bases
ATGGATACCCTGCAACTGGTGGTGACACTTCCCTTCAAGAGGGGCGCGCGGGTGGCACCTGTCGAATATCTCGAAGAGCC
CGAAATCAAGAGCGTGCTGGCGCGTATCGACCGCCGCACGCCTTCTGGACAGCGGGATTACGCGCTGTTCTCGCTGATGT
TCAATACGGGTGCACGAGTTCAGGAAATCCTGAATCTTCGCATTTGTGACCTTCGTCTGGTATCGCCCTGCCAGGTGCGC
CTGCACGGCAAAGGCAACAAGGTTCGCCTCTGCCCGATCTGGCGAAACACGGCCCAGCTTCTTCAGGAATTGATCAACAC
GCAGCATTCGCCCTCGGATAATCCCGCCGAGCAAAGGGTCTTTCTCAACGACCGCGGCACACCGCTGACCCGGTTCGGTG
TTCGATACTTACTGCGCAAATATGTCGATATGGCTGCGGGGGAAGAATCCACCCTGGCCGAAAAAAGCATCCATCCCCAC
TCGCTGAGGCACACGACGGCCATCCACCTTCTCAAGGCGGGTGTTGACATCGCCACCATCAGTCAATGGCTTGGCCACTC
GGGGCTGAACGTAACGATGCGCTACGCGCGGGCCGATATCGATATGAAGCGGCAAGCGCTCGAACAAGTCTTTCCCGACG
TGATGTCATCGGCAAAAGATCAGACGATCATCGCTTATGATGGCGGGATGTTGGGCTGGCTGCGCCGCCTATAG

Upstream 100 bases:

>100_bases
CACTTGAGGTCGAGCGTGGCAACAGCATTGCCACCCGCAATGCAAGGCTGGCGGCGATGCATACCTTTGCGCGGTTCCTA
TCTCGGAGCATCCCGAATAT

Downstream 100 bases:

>100_bases
TCGCTCAGTTATGTGGAGTGGTATCGTCGGAAGTCGCGCGTCTGCGGGCTCTTGCAGTGTCAGCTCCACATCTCTGCGCA
GTGCACGTTAGTCGAGGATC

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MDTLQLVVTLPFKRGARVAPVEYLEEPEIKSVLARIDRRTPSGQRDYALFSLMFNTGARVQEILNLRICDLRLVSPCQVR
LHGKGNKVRLCPIWRNTAQLLQELINTQHSPSDNPAEQRVFLNDRGTPLTRFGVRYLLRKYVDMAAGEESTLAEKSIHPH
SLRHTTAIHLLKAGVDIATISQWLGHSGLNVTMRYARADIDMKRQALEQVFPDVMSSAKDQTIIAYDGGMLGWLRRL

Sequences:

>Translated_237_residues
MDTLQLVVTLPFKRGARVAPVEYLEEPEIKSVLARIDRRTPSGQRDYALFSLMFNTGARVQEILNLRICDLRLVSPCQVR
LHGKGNKVRLCPIWRNTAQLLQELINTQHSPSDNPAEQRVFLNDRGTPLTRFGVRYLLRKYVDMAAGEESTLAEKSIHPH
SLRHTTAIHLLKAGVDIATISQWLGHSGLNVTMRYARADIDMKRQALEQVFPDVMSSAKDQTIIAYDGGMLGWLRRL
>Mature_237_residues
MDTLQLVVTLPFKRGARVAPVEYLEEPEIKSVLARIDRRTPSGQRDYALFSLMFNTGARVQEILNLRICDLRLVSPCQVR
LHGKGNKVRLCPIWRNTAQLLQELINTQHSPSDNPAEQRVFLNDRGTPLTRFGVRYLLRKYVDMAAGEESTLAEKSIHPH
SLRHTTAIHLLKAGVDIATISQWLGHSGLNVTMRYARADIDMKRQALEQVFPDVMSSAKDQTIIAYDGGMLGWLRRL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=190, Percent_Identity=30, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790244, Length=188, Percent_Identity=29.2553191489362, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1790767, Length=178, Percent_Identity=29.2134831460674, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 26886; Mature: 26886

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLQLVVTLPFKRGARVAPVEYLEEPEIKSVLARIDRRTPSGQRDYALFSLMFNTGARV
CCCEEEEEEECCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHH
QEILNLRICDLRLVSPCQVRLHGKGNKVRLCPIWRNTAQLLQELINTQHSPSDNPAEQRV
HHHHHHHHEEEEECCCEEEEEECCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCHHCEE
FLNDRGTPLTRFGVRYLLRKYVDMAAGEESTLAEKSIHPHSLRHTTAIHLLKAGVDIATI
EECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
SQWLGHSGLNVTMRYARADIDMKRQALEQVFPDVMSSAKDQTIIAYDGGMLGWLRRL
HHHHCCCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCC
>Mature Secondary Structure
MDTLQLVVTLPFKRGARVAPVEYLEEPEIKSVLARIDRRTPSGQRDYALFSLMFNTGARV
CCCEEEEEEECCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHH
QEILNLRICDLRLVSPCQVRLHGKGNKVRLCPIWRNTAQLLQELINTQHSPSDNPAEQRV
HHHHHHHHEEEEECCCEEEEEECCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCHHCEE
FLNDRGTPLTRFGVRYLLRKYVDMAAGEESTLAEKSIHPHSLRHTTAIHLLKAGVDIATI
EECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
SQWLGHSGLNVTMRYARADIDMKRQALEQVFPDVMSSAKDQTIIAYDGGMLGWLRRL
HHHHCCCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]