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The map label for this gene is xerD [C]

Identifier: 13474966

GI number: 13474966

Start: 4814973

End: 4815971

Strand: Reverse

Name: xerD [C]

Synonym: mll5956

Alternate gene names: 13474966

Gene position: 4815971-4814973 (Counterclockwise)

Preceding gene: 13474968

Following gene: 13474964

Centisome position: 68.45

GC content: 64.36

Gene sequence:

>999_bases
ATGAGCGCCGCCCCAACGTTCCCCGCTCTTCTTGAGGCCTTCTTCACCGATCGCCTCATCAGACAACGACAGGCAAGCCC
GCATACGCTTGCGAGCTACCGCGATACCTTCTGCCTGCTGCTGGCCTATGCCCAGCGGCAGCTACGCAAGGGGGCCTCGC
ACGTCACCTTGCCGGATCTCGACACCGCGTTCCTCGGCGCCTTCCTCGATCATCTCGAACGCGACCGCGACAACAGCGCC
CGCAGCCGCAATGTCCGTCTTGCCGCCATCCATTCCTTCTTCCGCTATGTGGCGTTGCATGCGCCGGAACACAGCGCATT
GGCGCAGCGTGTGCTCGCCATCCCGAGCAAGCGTTATGTTCGCCGGCCGGTCGCCTTCCTCACCAGCATCGAAGTGGCCG
CCTTGCTCGCCGCTCCCGACCTCGGCAGCTGGATCGGGCGCCGTGACCGGGCGCTTCTGTTGCTGGCCGTGCAGACCGGC
CTGCGTGCTGCCGAAATCGTCGGCCTTCGCTGCGAGGACATTGTCCTCGGCCCGGCCGCCTATGTGCAATGCCAGGGAAA
GGGCCGAAAACTCCGCAACACACCGCTTCGCAAGGATACGGTCACGGTGCTGCGTGCCTGGCTTGCCGAGCGACGCGGGC
GGAGCGCCGATCCTGCCTTCCCGACGATAAGCGGCACGTCATTGAGTCACGACGCACTTCAATACCTGCTGAACAAGCAC
CTCGCCGTCGCACGTCGCGACTGCCCATCGCTGGCCAGCAAGCACGTAACGCCGCATGTCCTGAGGCATACCCTGGCAAT
GGACCTGCTCCAGCACGGCGTCGACCGCTCGGTCATCGCTCTGTGGCTGGGCCACGAGTCGGTCGAAACCACCGCCATCT
ATCTTCAGGCCGACATGAAGCTCAAGGAGCAAGCTCTGGCAAGGACCGACACGGCCGACATCCGGTTGGGCCGCTACAAG
CCCGACGACCATCTCCTCGCATTCCTGAAGAGCCTCTGA

Upstream 100 bases:

>100_bases
ATGCCCACATCACCGACACCTATTGGTATTTGACGGCAACGCCGGAGCTGCTGCAGCAAGCGCTGCTGCGGGCAGAACAA
TCTCAGCCGGAATCCCGCCC

Downstream 100 bases:

>100_bases
TAATGCCGACCCAACAGCCAGAGATCCCCCGTATCCGTTGGCCTCCCGGCCGTCACTCGGAATAATCCGGCACTCGGAGT
TATGTCTCAGATCGTGCAGG

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSAAPTFPALLEAFFTDRLIRQRQASPHTLASYRDTFCLLLAYAQRQLRKGASHVTLPDLDTAFLGAFLDHLERDRDNSA
RSRNVRLAAIHSFFRYVALHAPEHSALAQRVLAIPSKRYVRRPVAFLTSIEVAALLAAPDLGSWIGRRDRALLLLAVQTG
LRAAEIVGLRCEDIVLGPAAYVQCQGKGRKLRNTPLRKDTVTVLRAWLAERRGRSADPAFPTISGTSLSHDALQYLLNKH
LAVARRDCPSLASKHVTPHVLRHTLAMDLLQHGVDRSVIALWLGHESVETTAIYLQADMKLKEQALARTDTADIRLGRYK
PDDHLLAFLKSL

Sequences:

>Translated_332_residues
MSAAPTFPALLEAFFTDRLIRQRQASPHTLASYRDTFCLLLAYAQRQLRKGASHVTLPDLDTAFLGAFLDHLERDRDNSA
RSRNVRLAAIHSFFRYVALHAPEHSALAQRVLAIPSKRYVRRPVAFLTSIEVAALLAAPDLGSWIGRRDRALLLLAVQTG
LRAAEIVGLRCEDIVLGPAAYVQCQGKGRKLRNTPLRKDTVTVLRAWLAERRGRSADPAFPTISGTSLSHDALQYLLNKH
LAVARRDCPSLASKHVTPHVLRHTLAMDLLQHGVDRSVIALWLGHESVETTAIYLQADMKLKEQALARTDTADIRLGRYK
PDDHLLAFLKSL
>Mature_331_residues
SAAPTFPALLEAFFTDRLIRQRQASPHTLASYRDTFCLLLAYAQRQLRKGASHVTLPDLDTAFLGAFLDHLERDRDNSAR
SRNVRLAAIHSFFRYVALHAPEHSALAQRVLAIPSKRYVRRPVAFLTSIEVAALLAAPDLGSWIGRRDRALLLLAVQTGL
RAAEIVGLRCEDIVLGPAAYVQCQGKGRKLRNTPLRKDTVTVLRAWLAERRGRSADPAFPTISGTSLSHDALQYLLNKHL
AVARRDCPSLASKHVTPHVLRHTLAMDLLQHGVDRSVIALWLGHESVETTAIYLQADMKLKEQALARTDTADIRLGRYKP
DDHLLAFLKSL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=289, Percent_Identity=30.1038062283737, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790244, Length=281, Percent_Identity=26.3345195729537, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37006; Mature: 36875

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAPTFPALLEAFFTDRLIRQRQASPHTLASYRDTFCLLLAYAQRQLRKGASHVTLPDL
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DTAFLGAFLDHLERDRDNSARSRNVRLAAIHSFFRYVALHAPEHSALAQRVLAIPSKRYV
HHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
RRPVAFLTSIEVAALLAAPDLGSWIGRRDRALLLLAVQTGLRAAEIVGLRCEDIVLGPAA
HHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEHHHCCCHHHHHCCCHHHEEECCHH
YVQCQGKGRKLRNTPLRKDTVTVLRAWLAERRGRSADPAFPTISGTSLSHDALQYLLNKH
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LAVARRDCPSLASKHVTPHVLRHTLAMDLLQHGVDRSVIALWLGHESVETTAIYLQADMK
HHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCEEEEEEEECHH
LKEQALARTDTADIRLGRYKPDDHLLAFLKSL
HHHHHHHHCCCCCEEECCCCCHHHHHHHHHHC
>Mature Secondary Structure 
SAAPTFPALLEAFFTDRLIRQRQASPHTLASYRDTFCLLLAYAQRQLRKGASHVTLPDL
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DTAFLGAFLDHLERDRDNSARSRNVRLAAIHSFFRYVALHAPEHSALAQRVLAIPSKRYV
HHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
RRPVAFLTSIEVAALLAAPDLGSWIGRRDRALLLLAVQTGLRAAEIVGLRCEDIVLGPAA
HHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEHHHCCCHHHHHCCCHHHEEECCHH
YVQCQGKGRKLRNTPLRKDTVTVLRAWLAERRGRSADPAFPTISGTSLSHDALQYLLNKH
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LAVARRDCPSLASKHVTPHVLRHTLAMDLLQHGVDRSVIALWLGHESVETTAIYLQADMK
HHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCEEEEEEEECHH
LKEQALARTDTADIRLGRYKPDDHLLAFLKSL
HHHHHHHHCCCCCEEECCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]