Click here to switch to the map view.

The map label for this gene is deoB

Identifier: 13474652

GI number: 13474652

Start: 4481934

End: 4483175

Strand: Reverse

Name: deoB

Synonym: mll5587

Alternate gene names: 13474652

Gene position: 4483175-4481934 (Counterclockwise)

Preceding gene: 13474654

Following gene: 13474651

Centisome position: 63.72

GC content: 65.3

Gene sequence:

>1242_bases
ATGGCGCGCGCTTTCCTCTTCGTCCTGGACTCTTTCGGCATCGGTGGTGCGGCCGACGCCGAACGTTATGGCGACGCCGG
CGCCAACACGCTTGCGCATATCGCCGAAGCTTGCGCCGAAGGGCGCGCGGATCGCGAGCGGCTTCGACAAGGGCCGCTGT
TTGTCCCGCACATGGCATCGCTCGGGCTTGGCAAGGCAGCGGAGACGGCGACAGGGTTGGGTTTTGCCCATTTCGGGACG
GATCTGATCGCCAATGCCTTCCATGGCGCGGCGCAGGAAGTTTCGAGCGGCAAGGACACCCCCTCCGGCCACTGGGAGAT
CGCCGGGCTGCCGGTGCGTTTCGACTGGGGGTACTTCCCGGATACGGTTCCGGCCTTTCCGGCCGATCTGACCGCGGCGA
TGATCCGCGAGGGCGAGGTGCCGGGCATTCTCGGCAACTGCCATGCGCCGGGCACCGAGATCATCGAACGGTTCGGCGAG
GAACACATCCGCACCGGCAAGCCGATCTGTTACACCTCCGTCGACTCGGTCCTGCAGATCGCCGCGCATGAAGTCCATTT
CGGGTTGGATCGGCTTTATGAATTCTGTCAGGTGGTGCGCCGGCTGGTTGATCCGCTCAGAATCGGGCGCGTGATCGCAC
GGCCGTTCGTCGGCGAGACCGCCGCCACCTTCCAGCGGACCTACAATCGCCATGACTATGCCGTGCCACCGCCGGAGCCG
ACCTTGCTTGACCGGCTGACGGCGCGGGGAAGCCGCGTCATCGCCGTCGGTAAGATCGGCGACATCTTCGCCCATCGCGG
GATTTCGGAAGTGCGCAAGGCCGCCGGCAACATGGCCATGTTCGACAAGGCGCTTGGTGCGATGGACGATGCCGGCGACG
GCGATCTCGTTTTCGCCAATTTCGTCGATTTCGACACCGAATTCGGCCATCGCCGCGACGTCGCCGGCTATGCAGCCGCG
CTCGAGGCCTTCGACCGACGGCTGCCGGAAGCATTCGCGAGGCTGCGGCAAGGCGACCTTCTCATCCTGACGGCCGACCA
CGGCAATGATCCGACCTGGCGAGGGACCGATCACACGCGTGAACGCATCCCGGTGATCGGCATGGGACCGGGTCTGGCAG
GTGGCGACATCGGACTGAGAACGACATTCGCCGATATCGGCGAGACCGTCGCCGAACACCTCGGGCTGGCGCCCGGCCGC
CACGGCACTTCTTTCCATGCGATGATTGGCGGCCATGCCTGA

Upstream 100 bases:

>100_bases
GACTGGACTATCGCGCCAAGCCGTTGCCGTTTGGTTTCCGAATTGCCAATGCCGCCTTGGAACCCTATGTCTGGGCGTCC
AAACTGGCAACAATGACCCG

Downstream 100 bases:

>100_bases
ATTACCCGAAGTCGAAACGGTCCGGCGTGGCCTGCAGCCGGTCCTGGAAGGTGCCCGTCTGACCAGGGTCGAGGCGCGAA
GGCCAGACCTGCGGTTCCCC

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MARAFLFVLDSFGIGGAADAERYGDAGANTLAHIAEACAEGRADRERLRQGPLFVPHMASLGLGKAAETATGLGFAHFGT
DLIANAFHGAAQEVSSGKDTPSGHWEIAGLPVRFDWGYFPDTVPAFPADLTAAMIREGEVPGILGNCHAPGTEIIERFGE
EHIRTGKPICYTSVDSVLQIAAHEVHFGLDRLYEFCQVVRRLVDPLRIGRVIARPFVGETAATFQRTYNRHDYAVPPPEP
TLLDRLTARGSRVIAVGKIGDIFAHRGISEVRKAAGNMAMFDKALGAMDDAGDGDLVFANFVDFDTEFGHRRDVAGYAAA
LEAFDRRLPEAFARLRQGDLLILTADHGNDPTWRGTDHTRERIPVIGMGPGLAGGDIGLRTTFADIGETVAEHLGLAPGR
HGTSFHAMIGGHA

Sequences:

>Translated_413_residues
MARAFLFVLDSFGIGGAADAERYGDAGANTLAHIAEACAEGRADRERLRQGPLFVPHMASLGLGKAAETATGLGFAHFGT
DLIANAFHGAAQEVSSGKDTPSGHWEIAGLPVRFDWGYFPDTVPAFPADLTAAMIREGEVPGILGNCHAPGTEIIERFGE
EHIRTGKPICYTSVDSVLQIAAHEVHFGLDRLYEFCQVVRRLVDPLRIGRVIARPFVGETAATFQRTYNRHDYAVPPPEP
TLLDRLTARGSRVIAVGKIGDIFAHRGISEVRKAAGNMAMFDKALGAMDDAGDGDLVFANFVDFDTEFGHRRDVAGYAAA
LEAFDRRLPEAFARLRQGDLLILTADHGNDPTWRGTDHTRERIPVIGMGPGLAGGDIGLRTTFADIGETVAEHLGLAPGR
HGTSFHAMIGGHA
>Mature_412_residues
ARAFLFVLDSFGIGGAADAERYGDAGANTLAHIAEACAEGRADRERLRQGPLFVPHMASLGLGKAAETATGLGFAHFGTD
LIANAFHGAAQEVSSGKDTPSGHWEIAGLPVRFDWGYFPDTVPAFPADLTAAMIREGEVPGILGNCHAPGTEIIERFGEE
HIRTGKPICYTSVDSVLQIAAHEVHFGLDRLYEFCQVVRRLVDPLRIGRVIARPFVGETAATFQRTYNRHDYAVPPPEPT
LLDRLTARGSRVIAVGKIGDIFAHRGISEVRKAAGNMAMFDKALGAMDDAGDGDLVFANFVDFDTEFGHRRDVAGYAAAL
EAFDRRLPEAFARLRQGDLLILTADHGNDPTWRGTDHTRERIPVIGMGPGLAGGDIGLRTTFADIGETVAEHLGLAPGRH
GTSFHAMIGGHA

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=410, Percent_Identity=56.3414634146341, Blast_Score=456, Evalue=1e-129,
Organism=Escherichia coli, GI1789781, Length=425, Percent_Identity=28.9411764705882, Blast_Score=109, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_RHILO (Q98BG5)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_106221.1
- ProteinModelPortal:   Q98BG5
- SMR:   Q98BG5
- GeneID:   1228882
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mll5587
- NMPDR:   fig|266835.1.peg.4325
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- ProtClustDB:   PRK05362
- BRENDA:   5.4.2.7
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 44330; Mature: 44198

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAFLFVLDSFGIGGAADAERYGDAGANTLAHIAEACAEGRADRERLRQGPLFVPHMAS
CCCEEEEHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHH
LGLGKAAETATGLGFAHFGTDLIANAFHGAAQEVSSGKDTPSGHWEIAGLPVRFDWGYFP
CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCC
DTVPAFPADLTAAMIREGEVPGILGNCHAPGTEIIERFGEEHIRTGKPICYTSVDSVLQI
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCHHHHHCCCCEEEHHHHHHHHH
AAHEVHFGLDRLYEFCQVVRRLVDPLRIGRVIARPFVGETAATFQRTYNRHDYAVPPPEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCH
TLLDRLTARGSRVIAVGKIGDIFAHRGISEVRKAAGNMAMFDKALGAMDDAGDGDLVFAN
HHHHHHHCCCCEEEEECCHHHHHHHCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEE
FVDFDTEFGHRRDVAGYAAALEAFDRRLPEAFARLRQGDLLILTADHGNDPTWRGTDHTR
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHH
ERIPVIGMGPGLAGGDIGLRTTFADIGETVAEHLGLAPGRHGTSFHAMIGGHA
HCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
>Mature Secondary Structure 
ARAFLFVLDSFGIGGAADAERYGDAGANTLAHIAEACAEGRADRERLRQGPLFVPHMAS
CCEEEEHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHH
LGLGKAAETATGLGFAHFGTDLIANAFHGAAQEVSSGKDTPSGHWEIAGLPVRFDWGYFP
CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCC
DTVPAFPADLTAAMIREGEVPGILGNCHAPGTEIIERFGEEHIRTGKPICYTSVDSVLQI
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCHHHHHCCCCEEEHHHHHHHHH
AAHEVHFGLDRLYEFCQVVRRLVDPLRIGRVIARPFVGETAATFQRTYNRHDYAVPPPEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCH
TLLDRLTARGSRVIAVGKIGDIFAHRGISEVRKAAGNMAMFDKALGAMDDAGDGDLVFAN
HHHHHHHCCCCEEEEECCHHHHHHHCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEE
FVDFDTEFGHRRDVAGYAAALEAFDRRLPEAFARLRQGDLLILTADHGNDPTWRGTDHTR
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHH
ERIPVIGMGPGLAGGDIGLRTTFADIGETVAEHLGLAPGRHGTSFHAMIGGHA
HCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11214968