Click here to switch to the map view.

The map label for this gene is rsmC [H]

Identifier: 13474635

GI number: 13474635

Start: 4465269

End: 4466279

Strand: Direct

Name: rsmC [H]

Synonym: mlr5563

Alternate gene names: 13474635

Gene position: 4465269-4466279 (Clockwise)

Preceding gene: 13474634

Following gene: 13474640

Centisome position: 63.46

GC content: 66.86

Gene sequence:

>1011_bases
ATGCCCGCTGAAGCGCTGAAGACGCTTTTCCATCCGTTCGAGGCTGAGGCTCTCTCCTTGCCGCGAAAGGGCGAGCGCAT
CCTCTTCCTCGGCGCCGAGCCCGGCCTGCGCGTGCCGCCGGGTTTCGAGGCAACGCTGCATCTCATACAGGGCTTCCGGC
CGCATTTCCGCGCATTGCAGACGGCGGGCTTTACCGTGACGCCGCAAGCCGAGGGGGACGGTTTTGATGCCGCCCTGGTG
CTCGCCGGCCGTCACCGCGGCCAGAACGAACTGCGTATCGCCGAGGCCCTCGAGCGCGTGGCGCCGCGCGGACTTGTCGT
CGTCGCCGGCGGCAAGGACGACGGCATTGCCAGCCTGCGCAAGCGCGTCGACGAACTCGTGCCGCTCGACGGCCATATGC
CGAAATATCACGGCATCGCCTTCTGGCTGCGCAGCCCGGCGGATGTGCAAGCCGCCGCTACACTTCGCGCCGCCAATCCC
GCTTTGCTGATCGAGGGGCGATTCCACACCGCACCCGGCATGTTCTCCTTCGATCGCATCGATGCGGGTTCGAAACTGCT
GGCCGACAACCTGCCCGGTGACCTGCGCGGCAATGCGGCCGATTTCTGCGCCGGCTGGGGTTATGTGGCGGCTGAGATGG
CTGCCCGCTCGTCAGGCCTGTCGGGCCTCGATCTCTATGAGGCCGATTTCGATGCGCTGGAGGCGGCCAAGGGCAACCTC
GCCAACACAGTGGCGCAAGGCTTCTTCTGGACGGATCTGCTCGCCGAGCCGGTCGAGCGCCGTTACGACGTCATCGCCAT
GAACCCGCCCTTCCACCGCAGCCGTGCGGCCGAGCCCGAGATCGGCGTCGGCATGATCCGCGCGGCAGCCAAGGCGTTGA
AGCCCGGTGGCAGGCTGTTCATGGTCGCCAACCGCCAGCTTCCCTATGAGTCCGTGCTGTCGGCGGCCTTTGCCAGCCAT
GCCGAGCTTGCCCGCGACGGCATGTTCAAGGTGTTTTCCGCACGGCGCTGA

Upstream 100 bases:

>100_bases
GGGCGCGGCTTATGTCGCGCCCGTTTTCGTTTGGAGCAGTTCCAGGAAAGTATGAGGCGCTTTCACCTTGGGAATTGCGT
AAGACTCTGGGAGCACTTCT

Downstream 100 bases:

>100_bases
CTTGCTTAATGCAGGCTGGCGACGCGCCGGACCTCGTCGGTGGCGTGCTGGTCGCCAAGCCTGAACTTGAGCGGTGCCGG
CCGGCCGAACAGGTAGCCCT

Product: ribosomal RNA small subunit methyltransferase C

Products: NA

Alternate protein names: 16S rRNA m2G1207 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase rsmC [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MPAEALKTLFHPFEAEALSLPRKGERILFLGAEPGLRVPPGFEATLHLIQGFRPHFRALQTAGFTVTPQAEGDGFDAALV
LAGRHRGQNELRIAEALERVAPRGLVVVAGGKDDGIASLRKRVDELVPLDGHMPKYHGIAFWLRSPADVQAAATLRAANP
ALLIEGRFHTAPGMFSFDRIDAGSKLLADNLPGDLRGNAADFCAGWGYVAAEMAARSSGLSGLDLYEADFDALEAAKGNL
ANTVAQGFFWTDLLAEPVERRYDVIAMNPPFHRSRAAEPEIGVGMIRAAAKALKPGGRLFMVANRQLPYESVLSAAFASH
AELARDGMFKVFSARR

Sequences:

>Translated_336_residues
MPAEALKTLFHPFEAEALSLPRKGERILFLGAEPGLRVPPGFEATLHLIQGFRPHFRALQTAGFTVTPQAEGDGFDAALV
LAGRHRGQNELRIAEALERVAPRGLVVVAGGKDDGIASLRKRVDELVPLDGHMPKYHGIAFWLRSPADVQAAATLRAANP
ALLIEGRFHTAPGMFSFDRIDAGSKLLADNLPGDLRGNAADFCAGWGYVAAEMAARSSGLSGLDLYEADFDALEAAKGNL
ANTVAQGFFWTDLLAEPVERRYDVIAMNPPFHRSRAAEPEIGVGMIRAAAKALKPGGRLFMVANRQLPYESVLSAAFASH
AELARDGMFKVFSARR
>Mature_335_residues
PAEALKTLFHPFEAEALSLPRKGERILFLGAEPGLRVPPGFEATLHLIQGFRPHFRALQTAGFTVTPQAEGDGFDAALVL
AGRHRGQNELRIAEALERVAPRGLVVVAGGKDDGIASLRKRVDELVPLDGHMPKYHGIAFWLRSPADVQAAATLRAANPA
LLIEGRFHTAPGMFSFDRIDAGSKLLADNLPGDLRGNAADFCAGWGYVAAEMAARSSGLSGLDLYEADFDALEAAKGNLA
NTVAQGFFWTDLLAEPVERRYDVIAMNPPFHRSRAAEPEIGVGMIRAAAKALKPGGRLFMVANRQLPYESVLSAAFASHA
ELARDGMFKVFSARR

Specific function: Specifically methylates the guanosine in position 1207 of 16S rRNA in the 30S particle [H]

COG id: COG2813

COG function: function code J; 16S RNA G1207 methylase RsmC

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmC family [H]

Homologues:

Organism=Escherichia coli, GI1790830, Length=166, Percent_Identity=36.7469879518072, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082206, Length=174, Percent_Identity=24.1379310344828, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR013675
- InterPro:   IPR007848 [H]

Pfam domain/function: PF05175 MTS; PF08468 MTS_N [H]

EC number: =2.1.1.172 [H]

Molecular weight: Translated: 36222; Mature: 36091

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAEALKTLFHPFEAEALSLPRKGERILFLGAEPGLRVPPGFEATLHLIQGFRPHFRALQ
CCHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHH
TAGFTVTPQAEGDGFDAALVLAGRHRGQNELRIAEALERVAPRGLVVVAGGKDDGIASLR
HCCCEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
KRVDELVPLDGHMPKYHGIAFWLRSPADVQAAATLRAANPALLIEGRFHTAPGMFSFDRI
HHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHC
DAGSKLLADNLPGDLRGNAADFCAGWGYVAAEMAARSSGLSGLDLYEADFDALEAAKGNL
CCCCHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCEEHHCCHHHHHHHCCHH
ANTVAQGFFWTDLLAEPVERRYDVIAMNPPFHRSRAAEPEIGVGMIRAAAKALKPGGRLF
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE
MVANRQLPYESVLSAAFASHAELARDGMFKVFSARR
EEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCC
>Mature Secondary Structure 
PAEALKTLFHPFEAEALSLPRKGERILFLGAEPGLRVPPGFEATLHLIQGFRPHFRALQ
CHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHH
TAGFTVTPQAEGDGFDAALVLAGRHRGQNELRIAEALERVAPRGLVVVAGGKDDGIASLR
HCCCEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
KRVDELVPLDGHMPKYHGIAFWLRSPADVQAAATLRAANPALLIEGRFHTAPGMFSFDRI
HHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHC
DAGSKLLADNLPGDLRGNAADFCAGWGYVAAEMAARSSGLSGLDLYEADFDALEAAKGNL
CCCCHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCEEHHCCHHHHHHHCCHH
ANTVAQGFFWTDLLAEPVERRYDVIAMNPPFHRSRAAEPEIGVGMIRAAAKALKPGGRLF
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE
MVANRQLPYESVLSAAFASHAELARDGMFKVFSARR
EEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA