| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is oppD [C]
Identifier: 13474598
GI number: 13474598
Start: 4424094
End: 4424930
Strand: Direct
Name: oppD [C]
Synonym: mlr5516
Alternate gene names: 13474598
Gene position: 4424094-4424930 (Clockwise)
Preceding gene: 13474597
Following gene: 13474599
Centisome position: 62.88
GC content: 64.52
Gene sequence:
>837_bases ATGAGCGACACCCTGCTCGACGTCGACGATCTTCGGGTTGATTTTCCGACCCGCACCGGCCTGGTCCAGGCCGTGCGTGG CGTTTCCTTCGCGCTTGGCCGTGAGCGGCTCGGCATCGTCGGCGAAAGCGGCTCGGGAAAATCGCAGACCGGCCGCGCCA TCATGGGCCTGACGCCGCCGCAGGCCAGGATATCGGCCAGGAAACTGGCCTTCGACGGCATCGACCTGCTCGGCATCTCG CCGCGCCAGCGTCGGGCGTTGCGGGGCAACCGCATCGCCATGATCCTGCAGGATCCGAAATATTCGCTCGACCCGGTGAT GAGCATTGGCCGCCAGATCGTCGAAACGCTGCGCACGCATGAAAAGGTTTCCAAGGCCGAAGCGCGCGAGCGGGCGCTGG CCATGCTGGAGGCGGTGCAGATCCGCGATCCCAAACGCGTTTTTGACCTGCACCCGCATGAAGTCTCCGGCGGCATGGGC CAGCGCGCCATGATCGCCATGATGCTGATCGCCGGACCGGAAATGATGATCGCCGACGAACCGACTTCGGCGCTCGATGT CACTGTACAACTCGACGTGCTCGGCATCCTCGATAAATTGGTCAGCGAGCGCGGCATGGGGCTGATCTTCATCTCGCACG ATCTGCGCCTGGTTTCGTCCTTCTGCGATCGCGTCATCGTCATGTATGCCGGCAAGGTGGTCGAGCAGCTCAAGGCCTCC GAACTCGGCCAGGCCCAGCATCCCTACACGCGCGGCCTGCTCAACTGCATGCCCAGGATCGGCTTCGAGCGCCACCCGCT GCCGGTGCTCGACCGCAAGCCGGAGTGGGCGGCATGA
Upstream 100 bases:
>100_bases TGGCCGGCGCGCCGGGCTTCGCCATCCTCATCGTCAGCCTCGGCTTCAACCTGCTCGGCGACGGCTTACGCGACGCCCTC GATCCCCGGAGTGGCGACCA
Downstream 100 bases:
>100_bases CAGCTGCGATCACCGTCGACGGGCTGGAAGTGGTCTTCGACCGGTTTCGCGCGCTGAAAGGCGTCAGCCTCGAAGTCAGG TCAGGCGAATCCTTCGGCCT
Product: oligopeptide ABC transporter, ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MSDTLLDVDDLRVDFPTRTGLVQAVRGVSFALGRERLGIVGESGSGKSQTGRAIMGLTPPQARISARKLAFDGIDLLGIS PRQRRALRGNRIAMILQDPKYSLDPVMSIGRQIVETLRTHEKVSKAEARERALAMLEAVQIRDPKRVFDLHPHEVSGGMG QRAMIAMMLIAGPEMMIADEPTSALDVTVQLDVLGILDKLVSERGMGLIFISHDLRLVSSFCDRVIVMYAGKVVEQLKAS ELGQAQHPYTRGLLNCMPRIGFERHPLPVLDRKPEWAA
Sequences:
>Translated_278_residues MSDTLLDVDDLRVDFPTRTGLVQAVRGVSFALGRERLGIVGESGSGKSQTGRAIMGLTPPQARISARKLAFDGIDLLGIS PRQRRALRGNRIAMILQDPKYSLDPVMSIGRQIVETLRTHEKVSKAEARERALAMLEAVQIRDPKRVFDLHPHEVSGGMG QRAMIAMMLIAGPEMMIADEPTSALDVTVQLDVLGILDKLVSERGMGLIFISHDLRLVSSFCDRVIVMYAGKVVEQLKAS ELGQAQHPYTRGLLNCMPRIGFERHPLPVLDRKPEWAA >Mature_277_residues SDTLLDVDDLRVDFPTRTGLVQAVRGVSFALGRERLGIVGESGSGKSQTGRAIMGLTPPQARISARKLAFDGIDLLGISP RQRRALRGNRIAMILQDPKYSLDPVMSIGRQIVETLRTHEKVSKAEARERALAMLEAVQIRDPKRVFDLHPHEVSGGMGQ RAMIAMMLIAGPEMMIADEPTSALDVTVQLDVLGILDKLVSERGMGLIFISHDLRLVSSFCDRVIVMYAGKVVEQLKASE LGQAQHPYTRGLLNCMPRIGFERHPLPVLDRKPEWAA
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27436953, Length=276, Percent_Identity=23.1884057971014, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9961250, Length=248, Percent_Identity=27.0161290322581, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI4505771, Length=248, Percent_Identity=27.0161290322581, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI9961252, Length=248, Percent_Identity=27.0161290322581, Blast_Score=69, Evalue=6e-12, Organism=Escherichia coli, GI48994883, Length=264, Percent_Identity=47.3484848484849, Blast_Score=237, Evalue=6e-64, Organism=Escherichia coli, GI1789963, Length=269, Percent_Identity=44.6096654275093, Blast_Score=223, Evalue=1e-59, Organism=Escherichia coli, GI1787759, Length=273, Percent_Identity=44.3223443223443, Blast_Score=220, Evalue=7e-59, Organism=Escherichia coli, GI145693107, Length=267, Percent_Identity=43.0711610486891, Blast_Score=199, Evalue=1e-52, Organism=Escherichia coli, GI1788506, Length=261, Percent_Identity=42.1455938697318, Blast_Score=188, Evalue=3e-49, Organism=Escherichia coli, GI1787500, Length=267, Percent_Identity=43.8202247191011, Blast_Score=186, Evalue=1e-48, Organism=Escherichia coli, GI1787548, Length=264, Percent_Identity=37.1212121212121, Blast_Score=181, Evalue=7e-47, Organism=Escherichia coli, GI1789962, Length=269, Percent_Identity=39.0334572490706, Blast_Score=171, Evalue=6e-44, Organism=Escherichia coli, GI1787758, Length=269, Percent_Identity=38.2899628252788, Blast_Score=150, Evalue=7e-38, Organism=Escherichia coli, GI1789890, Length=245, Percent_Identity=37.5510204081633, Blast_Score=138, Evalue=4e-34, Organism=Escherichia coli, GI1789891, Length=216, Percent_Identity=38.4259259259259, Blast_Score=120, Evalue=7e-29, Organism=Escherichia coli, GI48994997, Length=260, Percent_Identity=35.3846153846154, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1787547, Length=264, Percent_Identity=29.5454545454545, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI1789991, Length=251, Percent_Identity=31.4741035856574, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789032, Length=239, Percent_Identity=31.3807531380753, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI87081791, Length=235, Percent_Identity=31.9148936170213, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1789672, Length=222, Percent_Identity=32.4324324324324, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1786872, Length=196, Percent_Identity=35.2040816326531, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786398, Length=237, Percent_Identity=29.1139240506329, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1787089, Length=213, Percent_Identity=30.5164319248826, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87081834, Length=240, Percent_Identity=30.4166666666667, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788225, Length=223, Percent_Identity=30.9417040358744, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786345, Length=247, Percent_Identity=27.9352226720648, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1788761, Length=228, Percent_Identity=28.0701754385965, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787105, Length=238, Percent_Identity=28.9915966386555, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=29.6610169491525, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787370, Length=199, Percent_Identity=27.6381909547739, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787029, Length=217, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1787712, Length=215, Percent_Identity=31.6279069767442, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1790739, Length=280, Percent_Identity=26.0714285714286, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788644, Length=255, Percent_Identity=31.7647058823529, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1789873, Length=215, Percent_Identity=29.3023255813954, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790162, Length=224, Percent_Identity=27.6785714285714, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1786803, Length=209, Percent_Identity=26.7942583732057, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=31.304347826087, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1786319, Length=267, Percent_Identity=25.0936329588015, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI87081709, Length=200, Percent_Identity=30, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI48995001, Length=228, Percent_Identity=27.1929824561404, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1790467, Length=237, Percent_Identity=27.8481012658228, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789593, Length=213, Percent_Identity=25.3521126760563, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789586, Length=234, Percent_Identity=28.2051282051282, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1788165, Length=226, Percent_Identity=25.2212389380531, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790525, Length=234, Percent_Identity=24.3589743589744, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI1787792, Length=224, Percent_Identity=27.6785714285714, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI193209708, Length=246, Percent_Identity=29.6747967479675, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI193202349, Length=238, Percent_Identity=26.890756302521, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI25146777, Length=250, Percent_Identity=27.2, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI115534520, Length=231, Percent_Identity=28.1385281385281, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211017, Length=237, Percent_Identity=26.1603375527426, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193211015, Length=237, Percent_Identity=26.1603375527426, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71996809, Length=237, Percent_Identity=26.1603375527426, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI212646699, Length=225, Percent_Identity=27.1111111111111, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI193208177, Length=208, Percent_Identity=29.3269230769231, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI85726357, Length=252, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24641565, Length=216, Percent_Identity=32.8703703703704, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI23397593, Length=224, Percent_Identity=29.4642857142857, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 30654; Mature: 30523
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTLLDVDDLRVDFPTRTGLVQAVRGVSFALGRERLGIVGESGSGKSQTGRAIMGLTPP CCCCEECHHHCEECCCCHHHHHHHHHHHHHHHCHHHEEEEECCCCCCCCCCCEEEECCCC QARISARKLAFDGIDLLGISPRQRRALRGNRIAMILQDPKYSLDPVMSIGRQIVETLRTH HHHHHHHHHHHCCEEEECCCHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH EKVSKAEARERALAMLEAVQIRDPKRVFDLHPHEVSGGMGQRAMIAMMLIAGPEMMIADE HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHCCCCCCHHHHHHHHHHCCCCEEEECC PTSALDVTVQLDVLGILDKLVSERGMGLIFISHDLRLVSSFCDRVIVMYAGKVVEQLKAS CCCCEEEEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH ELGQAQHPYTRGLLNCMPRIGFERHPLPVLDRKPEWAA HCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SDTLLDVDDLRVDFPTRTGLVQAVRGVSFALGRERLGIVGESGSGKSQTGRAIMGLTPP CCCEECHHHCEECCCCHHHHHHHHHHHHHHHCHHHEEEEECCCCCCCCCCCEEEECCCC QARISARKLAFDGIDLLGISPRQRRALRGNRIAMILQDPKYSLDPVMSIGRQIVETLRTH HHHHHHHHHHHCCEEEECCCHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH EKVSKAEARERALAMLEAVQIRDPKRVFDLHPHEVSGGMGQRAMIAMMLIAGPEMMIADE HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHCCCCCCHHHHHHHHHHCCCCEEEECC PTSALDVTVQLDVLGILDKLVSERGMGLIFISHDLRLVSSFCDRVIVMYAGKVVEQLKAS CCCCEEEEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH ELGQAQHPYTRGLLNCMPRIGFERHPLPVLDRKPEWAA HCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]