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The map label for this gene is nudC [H]

Identifier: 13474587

GI number: 13474587

Start: 4412575

End: 4413519

Strand: Reverse

Name: nudC [H]

Synonym: mll5500

Alternate gene names: 13474587

Gene position: 4413519-4412575 (Counterclockwise)

Preceding gene: 13474588

Following gene: 13474586

Centisome position: 62.73

GC content: 65.82

Gene sequence:

>945_bases
ATGAGCTTCCGCCTGTTTGACGCGCCTTTGCGCGAGCCGAGCCAGTTCGTCGGCTTTGCCGGCAACACGATCGACCGGCA
ATCCGAGAACCGAGCCGACGATTCGGTCGACAAGGCGCTGGCCGATCCGACAACGCGGCTGCTTTTGATGAATGGCGGCC
GGCTCCACCTGAAGCTTGGAACAAGCGGCAGTCTCGACCCCTGGTTCGACGCCGCCGGGAGCGAGCCTTTCAAGCCGTCC
TTCGCCGGGGCTGTGCTGCTCGGCTTTTCCGAACAGGGGCCGGTGCTGGCGATGCCTGTCGCAATCGAGGCCGAACAGCT
GCCCGAGACCGTCAAGGCGATCGACTACCGCTCTGTCTATATGCAAGGCTTGATCGACGAAGCGGCGGCCGGCGCGATGG
CGCAAGGGGCAGCCTTGCTCGCCTGGCACGCCAGCCATCGTTTCTGCAGCAAGTGCGGCACGCAATCCGAAATGCGGGCT
GGCGGCTACAAGCGCCATTGCCCGAATTGCGGTACCGAGCATTTTCCGCGCACCGACCCGGTGGCGATCATGCTGACTGC
GACGCGGGAAAAATGCCTGCTCGGGCGCGGCCGGCATTTCGCGCCGGGCATGTATTCGGCGCTGGCCGGCTTCATCGAAC
CGGGCGAGACGATCGAGGCCGCGGTGCGCCGCGAAACGCTGGAGGAGGCCGGCATCCGGCTCGGCCGCGTCGTCTACCAC
GCCAGCCAGCCCTGGCCGTTTCCCTATTCTCTGATGATCGGCTGCTTCGGCGAGCCGCTCAATGAGGACATCCAGGCCGA
CCTCAACGAGCTGGAGGACTGCCGCTGGTTCGGCCGCGACGAGGTGCGCCTCATGCTGGCCAGGGAGCATGCCGACAACC
TTGTCACGCCGCCGAAAGGGGCGATCGCGCACCACCTTATCCGCGCCTGGGTCGACAGCGAATAG

Upstream 100 bases:

>100_bases
TTGCCGAAACGATAAGGGCGGCGCTATAAGCCTTCGCCAGTGTTCATCCTAAAAACACGTCCATCCCCAGACATGTCCAT
CCCAAAGCATCAGAGTCCGC

Downstream 100 bases:

>100_bases
CCAATACTGAAAGTCATTGCAGGAGAGACAAATGATCCGTCACACCGTCGTCTTCACGCTGAAGCATGCATCGCACTCGC
TCGAGGAAAAGCGGTTCCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSFRLFDAPLREPSQFVGFAGNTIDRQSENRADDSVDKALADPTTRLLLMNGGRLHLKLGTSGSLDPWFDAAGSEPFKPS
FAGAVLLGFSEQGPVLAMPVAIEAEQLPETVKAIDYRSVYMQGLIDEAAAGAMAQGAALLAWHASHRFCSKCGTQSEMRA
GGYKRHCPNCGTEHFPRTDPVAIMLTATREKCLLGRGRHFAPGMYSALAGFIEPGETIEAAVRRETLEEAGIRLGRVVYH
ASQPWPFPYSLMIGCFGEPLNEDIQADLNELEDCRWFGRDEVRLMLAREHADNLVTPPKGAIAHHLIRAWVDSE

Sequences:

>Translated_314_residues
MSFRLFDAPLREPSQFVGFAGNTIDRQSENRADDSVDKALADPTTRLLLMNGGRLHLKLGTSGSLDPWFDAAGSEPFKPS
FAGAVLLGFSEQGPVLAMPVAIEAEQLPETVKAIDYRSVYMQGLIDEAAAGAMAQGAALLAWHASHRFCSKCGTQSEMRA
GGYKRHCPNCGTEHFPRTDPVAIMLTATREKCLLGRGRHFAPGMYSALAGFIEPGETIEAAVRRETLEEAGIRLGRVVYH
ASQPWPFPYSLMIGCFGEPLNEDIQADLNELEDCRWFGRDEVRLMLAREHADNLVTPPKGAIAHHLIRAWVDSE
>Mature_313_residues
SFRLFDAPLREPSQFVGFAGNTIDRQSENRADDSVDKALADPTTRLLLMNGGRLHLKLGTSGSLDPWFDAAGSEPFKPSF
AGAVLLGFSEQGPVLAMPVAIEAEQLPETVKAIDYRSVYMQGLIDEAAAGAMAQGAALLAWHASHRFCSKCGTQSEMRAG
GYKRHCPNCGTEHFPRTDPVAIMLTATREKCLLGRGRHFAPGMYSALAGFIEPGETIEAAVRRETLEEAGIRLGRVVYHA
SQPWPFPYSLMIGCFGEPLNEDIQADLNELEDCRWFGRDEVRLMLAREHADNLVTPPKGAIAHHLIRAWVDSE

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI13899267, Length=197, Percent_Identity=47.7157360406091, Blast_Score=197, Evalue=9e-51,
Organism=Homo sapiens, GI50593112, Length=212, Percent_Identity=40.5660377358491, Blast_Score=159, Evalue=3e-39,
Organism=Escherichia coli, GI48994995, Length=173, Percent_Identity=33.5260115606936, Blast_Score=109, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71986510, Length=212, Percent_Identity=34.4339622641509, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI212645999, Length=212, Percent_Identity=34.4339622641509, Blast_Score=115, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6321371, Length=208, Percent_Identity=35.0961538461538, Blast_Score=107, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 34456; Mature: 34324

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFRLFDAPLREPSQFVGFAGNTIDRQSENRADDSVDKALADPTTRLLLMNGGRLHLKLG
CCCEECCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCEEEEEEC
TSGSLDPWFDAAGSEPFKPSFAGAVLLGFSEQGPVLAMPVAIEAEQLPETVKAIDYRSVY
CCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECHHHHHHHHHHHHHHHHH
MQGLIDEAAAGAMAQGAALLAWHASHRFCSKCGTQSEMRAGGYKRHCPNCGTEHFPRTDP
HHHHHHHHHHCHHHCCCEEEEEHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
VAIMLTATREKCLLGRGRHFAPGMYSALAGFIEPGETIEAAVRRETLEEAGIRLGRVVYH
EEEEEECCHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEE
ASQPWPFPYSLMIGCFGEPLNEDIQADLNELEDCRWFGRDEVRLMLAREHADNLVTPPKG
CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHEEEEEHHHCCCCCCCCCH
AIAHHLIRAWVDSE
HHHHHHHHHHHCCC
>Mature Secondary Structure 
SFRLFDAPLREPSQFVGFAGNTIDRQSENRADDSVDKALADPTTRLLLMNGGRLHLKLG
CCEECCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCEEEEEEC
TSGSLDPWFDAAGSEPFKPSFAGAVLLGFSEQGPVLAMPVAIEAEQLPETVKAIDYRSVY
CCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECHHHHHHHHHHHHHHHHH
MQGLIDEAAAGAMAQGAALLAWHASHRFCSKCGTQSEMRAGGYKRHCPNCGTEHFPRTDP
HHHHHHHHHHCHHHCCCEEEEEHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
VAIMLTATREKCLLGRGRHFAPGMYSALAGFIEPGETIEAAVRRETLEEAGIRLGRVVYH
EEEEEECCHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEE
ASQPWPFPYSLMIGCFGEPLNEDIQADLNELEDCRWFGRDEVRLMLAREHADNLVTPPKG
CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHEEEEEHHHCCCCCCCCCH
AIAHHLIRAWVDSE
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA