BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

Click here to switch to the map view.

The map label for this gene is ykvO [H]

Identifier: 13474403

GI number: 13474403

Start: 4210776

End: 4211510

Strand: Direct

Name: ykvO [H]

Synonym: mlr5278

Alternate gene names: 13474403

Gene position: 4210776-4211510 (Clockwise)

Preceding gene: 13474401

Following gene: 13474404

Centisome position: 59.85

GC content: 67.89

Gene sequence:

>735_bases
ATGACCAGACTGAATGGAAAGACCGCCGTCATCACCGGCGGCGCTACCGGCATCGGCCGCGCCGCGGCAACGCGCTTCAT
CGAGGAGGGCGCCTTCGTCTTCATCTATGGCCGCCGGCAGGAAGCGCTCGACGCCGCTGTGGCCGACCTCGGGGCCAATG
CCCGCGCGGTGAAGGGCTCGGTCTCCGATCTGGCCGACCTCGACCGGCTCTACGCGGCGGTGAAGGCCGAGCGCGGAACC
CTCGATATCGTCTTCGCCAATGCCGGGGCCGGAGGCCCGCTTCCGCTCGGCCAGATCACCGCCGAGCACATTGATGAAAC
ATTCGACACCAATGTGAAGGGTACGATCTTCACGGTCCAGCAGGCGTTGCCGCTGATGGGCCCGGGCGGTTCGATCATCC
TGACCGGATCGAGCGCCGGCACCACGGGCGCCCCGGGATTCACTGCCTACAGCGCGAGCAAGGCGGCCGTGCGCAACCTC
GCACGGACCTGGGCCGAGGATCTTAAGGGCACCGGCATTCGGGTAAACGTGCTGTCGCCCGGGGCGACGGCGACTGAACT
CGCAAAGGAAGCGCTGGGCGAGGAGGGCCAGAAGGCCTACGGCGCGATGACCCCGCTCCAGCGCATGGCCGATCCGGCGG
AGATCGGGGCCGTGGCTGCCTTTCTCGCGTCGTCGGACAGCAGCTTCATGACCGCCAGCGAAGTCGCCGTCGACGGCGGC
CTGGCGCAACTTTGA

Upstream 100 bases:

>100_bases
GTGCGCACTTCCTCACTCAACGCCTGATCCCGGCAAACCCATCTTGGGGTCTCGGGGCTTTCCCGAATGACCAAGGCGGA
AGCCTGGAAGGATGCACGTC

Downstream 100 bases:

>100_bases
CCTCAGCGCGGTCCGTGCCTTGCCCGCGTGCAAAGAAAGACAAAGATTATGAAAAAACTCGAAGGTAAGATCGCAGTCAT
CACGGGCGGAAGCAGCGGGA

Product: glucose dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MTRLNGKTAVITGGATGIGRAAATRFIEEGAFVFIYGRRQEALDAAVADLGANARAVKGSVSDLADLDRLYAAVKAERGT
LDIVFANAGAGGPLPLGQITAEHIDETFDTNVKGTIFTVQQALPLMGPGGSIILTGSSAGTTGAPGFTAYSASKAAVRNL
ARTWAEDLKGTGIRVNVLSPGATATELAKEALGEEGQKAYGAMTPLQRMADPAEIGAVAAFLASSDSSFMTASEVAVDGG
LAQL

Sequences:

>Translated_244_residues
MTRLNGKTAVITGGATGIGRAAATRFIEEGAFVFIYGRRQEALDAAVADLGANARAVKGSVSDLADLDRLYAAVKAERGT
LDIVFANAGAGGPLPLGQITAEHIDETFDTNVKGTIFTVQQALPLMGPGGSIILTGSSAGTTGAPGFTAYSASKAAVRNL
ARTWAEDLKGTGIRVNVLSPGATATELAKEALGEEGQKAYGAMTPLQRMADPAEIGAVAAFLASSDSSFMTASEVAVDGG
LAQL
>Mature_243_residues
TRLNGKTAVITGGATGIGRAAATRFIEEGAFVFIYGRRQEALDAAVADLGANARAVKGSVSDLADLDRLYAAVKAERGTL
DIVFANAGAGGPLPLGQITAEHIDETFDTNVKGTIFTVQQALPLMGPGGSIILTGSSAGTTGAPGFTAYSASKAAVRNLA
RTWAEDLKGTGIRVNVLSPGATATELAKEALGEEGQKAYGAMTPLQRMADPAEIGAVAAFLASSDSSFMTASEVAVDGGL
AQL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=33.4661354581673, Blast_Score=129, Evalue=2e-30,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=33.469387755102, Blast_Score=110, Evalue=8e-25,
Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=31.2252964426877, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=30.5555555555556, Blast_Score=104, Evalue=6e-23,
Organism=Homo sapiens, GI40254992, Length=237, Percent_Identity=30.8016877637131, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=33.8582677165354, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=36.1702127659575, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=35.0515463917526, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI209862901, Length=204, Percent_Identity=29.9019607843137, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI19923983, Length=204, Percent_Identity=29.9019607843137, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=32.7433628318584, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4758504, Length=253, Percent_Identity=29.6442687747036, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI32455239, Length=159, Percent_Identity=30.8176100628931, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI5031765, Length=159, Percent_Identity=30.8176100628931, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=30, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI210032110, Length=192, Percent_Identity=28.6458333333333, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI7705925, Length=243, Percent_Identity=26.3374485596708, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI142976729, Length=194, Percent_Identity=27.8350515463918, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI4503817, Length=192, Percent_Identity=26.5625, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI10190704, Length=246, Percent_Identity=29.6747967479675, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=35.7723577235772, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=32.8063241106719, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787335, Length=239, Percent_Identity=30.9623430962343, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=33.6099585062241, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=32.156862745098, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787820, Length=207, Percent_Identity=34.2995169082126, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=30.6122448979592, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=30.0813008130081, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082160, Length=243, Percent_Identity=27.9835390946502, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787526, Length=237, Percent_Identity=27.8481012658228, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1789208, Length=244, Percent_Identity=29.0983606557377, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=28.4552845528455, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786701, Length=187, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788891, Length=258, Percent_Identity=29.8449612403101, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=35.2272727272727, Blast_Score=116, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=35.7414448669202, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=28.6852589641434, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=32.4427480916031, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=34.7328244274809, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=30.2681992337165, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=32.0610687022901, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=31.6793893129771, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=32.824427480916, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=31.5789473684211, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=27.3469387755102, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=32.0610687022901, Blast_Score=93, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=32.6923076923077, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=241, Percent_Identity=27.3858921161826, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=28.8, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=31.1787072243346, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=32.4528301886792, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=30, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=260, Percent_Identity=31.1538461538462, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=29.7619047619048, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=31.5384615384615, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=25.5725190839695, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=29.6747967479675, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=30.7984790874525, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=27.6679841897233, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=259, Percent_Identity=29.7297297297297, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=27.7992277992278, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=262, Percent_Identity=28.6259541984733, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=236, Percent_Identity=27.9661016949153, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=27.1255060728745, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=25.5208333333333, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=187, Percent_Identity=27.807486631016, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=223, Percent_Identity=33.1838565022422, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6322227, Length=239, Percent_Identity=30.5439330543933, Blast_Score=81, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=28, Blast_Score=80, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6322067, Length=225, Percent_Identity=28.4444444444444, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=34.6613545816733, Blast_Score=130, Evalue=9e-31,
Organism=Drosophila melanogaster, GI24644339, Length=245, Percent_Identity=32.2448979591837, Blast_Score=111, Evalue=3e-25,
Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=32.4110671936759, Blast_Score=107, Evalue=6e-24,
Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=30.7086614173228, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=31.3725490196078, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=30.0411522633745, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI116007236, Length=206, Percent_Identity=28.1553398058252, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=29.1338582677165, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24644337, Length=256, Percent_Identity=31.25, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24581726, Length=191, Percent_Identity=30.3664921465969, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI116007238, Length=210, Percent_Identity=26.1904761904762, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641232, Length=210, Percent_Identity=27.1428571428571, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24640492, Length=195, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=26.5625, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281364892, Length=198, Percent_Identity=30.3030303030303, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571387, Length=215, Percent_Identity=28.8372093023256, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24584748, Length=188, Percent_Identity=26.063829787234, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161076933, Length=188, Percent_Identity=26.063829787234, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24663911, Length=233, Percent_Identity=24.8927038626609, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI18859837, Length=194, Percent_Identity=32.4742268041237, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24736; Mature: 24605

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLNGKTAVITGGATGIGRAAATRFIEEGAFVFIYGRRQEALDAAVADLGANARAVKGS
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCHHHCCC
VSDLADLDRLYAAVKAERGTLDIVFANAGAGGPLPLGQITAEHIDETFDTNVKGTIFTVQ
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE
QALPLMGPGGSIILTGSSAGTTGAPGFTAYSASKAAVRNLARTWAEDLKGTGIRVNVLSP
HHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
GATATELAKEALGEEGQKAYGAMTPLQRMADPAEIGAVAAFLASSDSSFMTASEVAVDGG
CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEHHHHHCCCC
LAQL
CCCC
>Mature Secondary Structure 
TRLNGKTAVITGGATGIGRAAATRFIEEGAFVFIYGRRQEALDAAVADLGANARAVKGS
CCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCHHHCCC
VSDLADLDRLYAAVKAERGTLDIVFANAGAGGPLPLGQITAEHIDETFDTNVKGTIFTVQ
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE
QALPLMGPGGSIILTGSSAGTTGAPGFTAYSASKAAVRNLARTWAEDLKGTGIRVNVLSP
HHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
GATATELAKEALGEEGQKAYGAMTPLQRMADPAEIGAVAAFLASSDSSFMTASEVAVDGG
CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEHHHHHCCCC
LAQL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]