BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is ykvO [H]

Identifier: 13474404

GI number: 13474404

Start: 4211559

End: 4212311

Strand: Direct

Name: ykvO [H]

Synonym: mlr5280

Alternate gene names: 13474404

Gene position: 4211559-4212311 (Clockwise)

Preceding gene: 13474403

Following gene: 13474405

Centisome position: 59.86

GC content: 58.3

Gene sequence:

>753_bases
ATGAAAAAACTCGAAGGTAAGATCGCAGTCATCACGGGCGGAAGCAGCGGGATTGGATTGGCCACAGCCAAGCGCTTCGT
AGAAGAAGGAGCGCACGTCGTGATCACCGGGCGAAGAGAGAAAGAGTTGAAGGAGGCCGCAGCCTTCATCATGAGAAACG
TTACGACGGTCGTGGGTGACGTGTCGCTCTTGGAAGATCTGGATCGCCTCTATGCCGTCGTGAAAGAGAAACATGGTCAC
ATCGACGTTCTCTTCGCGAACGCTGGCGCGGGGACAATCGCACCGCTCGCGGCAGCCACTGAGGCCCACTTCGATCAGAC
CTTCGACGTGAACGTGAAGGGGCTGTTCTTCACGGTGCAGAAGGCCCTTCCCCTCTTCAAAGACGGCGGTTCGATTATTC
TGAATTCTTCGGTTTCGAACGTGTTGGGATTGCCGGGGTTTAGCACATACGCCGCGAGTAAGGCGGCGGTGCGCAACTTC
TCGCGCGCTTGGACGCTAGAGCTGAAAGACCGCAAAATCCGAGTGAATACGATGAGCCCCGGAGCAATCGAGACCCCTGC
GTTGGAGACAACAACGGGCCTTACCCCTGAGCAAGCCGAGCAAGCGGTCGCCCAGTTTGCGTCACAGATCCCAATGGGTC
GCAGGGGCAAACCGGAGGAAATCGCGGCTGCCGTCACGTTCCTCGCCTCCGACGACAGTTCCTACGTCACCGGTGTGGAT
CTCGCCGTCGACGGAGGCATGGCGCAGGTCTAA

Upstream 100 bases:

>100_bases
CTTCATGACCGCCAGCGAAGTCGCCGTCGACGGCGGCCTGGCGCAACTTTGACCTCAGCGCGGTCCGTGCCTTGCCCGCG
TGCAAAGAAAGACAAAGATT

Downstream 100 bases:

>100_bases
CCCGGCGTTAAAACAAGATCGGAGAAGCATTATGAGCTATTCAATTATAGGATTCGGCAATATTGGCCAGGCCCTGGCCA
AGGCGTTTGCCCGCAAGGGC

Product: glucose dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKKLEGKIAVITGGSSGIGLATAKRFVEEGAHVVITGRREKELKEAAAFIMRNVTTVVGDVSLLEDLDRLYAVVKEKHGH
IDVLFANAGAGTIAPLAAATEAHFDQTFDVNVKGLFFTVQKALPLFKDGGSIILNSSVSNVLGLPGFSTYAASKAAVRNF
SRAWTLELKDRKIRVNTMSPGAIETPALETTTGLTPEQAEQAVAQFASQIPMGRRGKPEEIAAAVTFLASDDSSYVTGVD
LAVDGGMAQV

Sequences:

>Translated_250_residues
MKKLEGKIAVITGGSSGIGLATAKRFVEEGAHVVITGRREKELKEAAAFIMRNVTTVVGDVSLLEDLDRLYAVVKEKHGH
IDVLFANAGAGTIAPLAAATEAHFDQTFDVNVKGLFFTVQKALPLFKDGGSIILNSSVSNVLGLPGFSTYAASKAAVRNF
SRAWTLELKDRKIRVNTMSPGAIETPALETTTGLTPEQAEQAVAQFASQIPMGRRGKPEEIAAAVTFLASDDSSYVTGVD
LAVDGGMAQV
>Mature_250_residues
MKKLEGKIAVITGGSSGIGLATAKRFVEEGAHVVITGRREKELKEAAAFIMRNVTTVVGDVSLLEDLDRLYAVVKEKHGH
IDVLFANAGAGTIAPLAAATEAHFDQTFDVNVKGLFFTVQKALPLFKDGGSIILNSSVSNVLGLPGFSTYAASKAAVRNF
SRAWTLELKDRKIRVNTMSPGAIETPALETTTGLTPEQAEQAVAQFASQIPMGRRGKPEEIAAAVTFLASDDSSYVTGVD
LAVDGGMAQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=34.5381526104418, Blast_Score=145, Evalue=4e-35,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=32.5396825396825, Blast_Score=129, Evalue=3e-30,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=34, Blast_Score=124, Evalue=7e-29,
Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=28.968253968254, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=34.8066298342541, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=32.4110671936759, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI15277342, Length=266, Percent_Identity=31.5789473684211, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=34.7368421052632, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=32.4675324675325, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI10190704, Length=256, Percent_Identity=33.984375, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=30.4526748971193, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=29.2682926829268, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI109715829, Length=243, Percent_Identity=28.3950617283951, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI4503817, Length=233, Percent_Identity=28.3261802575107, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI4758504, Length=269, Percent_Identity=29.7397769516729, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI142976729, Length=210, Percent_Identity=29.5238095238095, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI223718074, Length=205, Percent_Identity=32.1951219512195, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI210032110, Length=208, Percent_Identity=28.3653846153846, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI40807363, Length=207, Percent_Identity=29.4685990338164, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI7657478, Length=186, Percent_Identity=31.7204301075269, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI4504505, Length=242, Percent_Identity=24.3801652892562, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=36.3636363636364, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=33.7301587301587, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=33.4661354581673, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=33.7349397590361, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=31.9838056680162, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=33.8645418326693, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=31.4516129032258, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=34.0080971659919, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787905, Length=256, Percent_Identity=33.984375, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=30.1204819277108, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=30.3643724696356, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1786701, Length=186, Percent_Identity=32.7956989247312, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787820, Length=223, Percent_Identity=27.8026905829596, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787526, Length=245, Percent_Identity=28.1632653061224, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=24.2307692307692, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788891, Length=270, Percent_Identity=28.1481481481481, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=33.0708661417323, Blast_Score=136, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=34.7328244274809, Blast_Score=131, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=36.3295880149813, Blast_Score=130, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=35.8490566037736, Blast_Score=130, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=34.5724907063197, Blast_Score=128, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=34.2007434944238, Blast_Score=127, Evalue=7e-30,
Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=33.5793357933579, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=33.969465648855, Blast_Score=123, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=33.7037037037037, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=36.3984674329502, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=31.3725490196078, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=33.0798479087452, Blast_Score=118, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=33.7121212121212, Blast_Score=117, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=33.4586466165414, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17531453, Length=274, Percent_Identity=32.8467153284672, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=31.8352059925094, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=31.3432835820896, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=32.0754716981132, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=34.6613545816733, Blast_Score=113, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=34.3873517786561, Blast_Score=113, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=32.6693227091633, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=31.6981132075472, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=30.4878048780488, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=28.5171102661597, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=31.6, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=29.1338582677165, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=29.1828793774319, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=262, Percent_Identity=29.0076335877863, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17564282, Length=203, Percent_Identity=32.0197044334975, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=29.6875, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=247, Percent_Identity=25.9109311740891, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=191, Percent_Identity=29.8429319371728, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=192, Percent_Identity=29.6875, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193207185, Length=149, Percent_Identity=33.5570469798658, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=255, Percent_Identity=29.0196078431373, Blast_Score=95, Evalue=9e-21,
Organism=Saccharomyces cerevisiae, GI6322067, Length=245, Percent_Identity=30.6122448979592, Blast_Score=87, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6322227, Length=220, Percent_Identity=29.0909090909091, Blast_Score=83, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=32.1428571428571, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=205, Percent_Identity=28.780487804878, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=35.3658536585366, Blast_Score=144, Evalue=4e-35,
Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=35.5731225296443, Blast_Score=144, Evalue=7e-35,
Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=35.0597609561753, Blast_Score=137, Evalue=5e-33,
Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=35.0597609561753, Blast_Score=137, Evalue=9e-33,
Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=32.6530612244898, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=33.4661354581673, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=34, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=34.8, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI281364494, Length=243, Percent_Identity=29.6296296296296, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24640492, Length=194, Percent_Identity=28.3505154639175, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=28.1853281853282, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI116007236, Length=201, Percent_Identity=26.3681592039801, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281364892, Length=194, Percent_Identity=30.9278350515464, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21358495, Length=202, Percent_Identity=29.7029702970297, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007234, Length=247, Percent_Identity=26.7206477732794, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641232, Length=201, Percent_Identity=29.3532338308458, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24663911, Length=244, Percent_Identity=26.2295081967213, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI18859837, Length=249, Percent_Identity=26.1044176706827, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24641388, Length=247, Percent_Identity=28.3400809716599, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI116007238, Length=189, Percent_Identity=26.984126984127, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21356301, Length=209, Percent_Identity=25.3588516746411, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581726, Length=217, Percent_Identity=26.2672811059908, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221331218, Length=212, Percent_Identity=30.188679245283, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24665243, Length=194, Percent_Identity=31.4432989690722, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26407; Mature: 26407

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLEGKIAVITGGSSGIGLATAKRFVEEGAHVVITGRREKELKEAAAFIMRNVTTVVGD
CCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
VSLLEDLDRLYAVVKEKHGHIDVLFANAGAGTIAPLAAATEAHFDQTFDVNVKGLFFTVQ
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCHHEEEHH
KALPLFKDGGSIILNSSVSNVLGLPGFSTYAASKAAVRNFSRAWTLELKDRKIRVNTMSP
HHCCEECCCCCEEEECCHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCC
GAIETPALETTTGLTPEQAEQAVAQFASQIPMGRRGKPEEIAAAVTFLASDDSSYVTGVD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCCCEEEEEE
LAVDGGMAQV
EEECCCCCCC
>Mature Secondary Structure
MKKLEGKIAVITGGSSGIGLATAKRFVEEGAHVVITGRREKELKEAAAFIMRNVTTVVGD
CCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
VSLLEDLDRLYAVVKEKHGHIDVLFANAGAGTIAPLAAATEAHFDQTFDVNVKGLFFTVQ
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCHHEEEHH
KALPLFKDGGSIILNSSVSNVLGLPGFSTYAASKAAVRNFSRAWTLELKDRKIRVNTMSP
HHCCEECCCCCEEEECCHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCC
GAIETPALETTTGLTPEQAEQAVAQFASQIPMGRRGKPEEIAAAVTFLASDDSSYVTGVD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCCCEEEEEE
LAVDGGMAQV
EEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]