Click here to switch to the map view.

The map label for this gene is deoC [H]

Identifier: 13474008

GI number: 13474008

Start: 3803394

End: 3804440

Strand: Reverse

Name: deoC [H]

Synonym: mll4784

Alternate gene names: 13474008

Gene position: 3804440-3803394 (Counterclockwise)

Preceding gene: 13474009

Following gene: 13474007

Centisome position: 54.07

GC content: 65.9

Gene sequence:

>1047_bases
ATGAGCAGCACAATCCGCGAAGCCGATCTTGGCACCAAGGTGACGCCGCTGCCGGCCCGCGCCGCCGCCAACACCCCCGT
ACCGCTGGACCATCGCATCGCGCGCAATCCCGGCATGAAGCTTGACCTCGGCTTCATGGAATCGGTGCGCAGCGTCAACC
GTTCGGCGCTGGAACGGCGCGTCGCCAGCCTGACCAAACGGCGTTCGATCAAGGCCGACAACCAGGCGGCCTGGCTGCTG
CGCGCCGTCGCCTGCATGGATCTGACGACGCTGAACTCCAACGACACCGAGGAGCGCGTGCGCCGGCTCTGCGCCAAGGC
GATCAACCCGTTCCGCCGCGACATCGTCGAAGGCCTCGGCATTGCGGGTGAAACCATCCGGCCGGCTGCCGTCTGCGTGT
ACCATCCCTTCGTCGCCACGGCCGTCGATGCCGTGCGCGGCACCGGCATCCACGTCGCCGCCGTCTCCACCGCCTTTCCG
CATGGGCTTGCGCCGCTGTCGACCCGGCTGCAGGAGATCGAGGCTTCGGTGCGCGACGGCGCCGACGAGATCGACGTCGT
CATTCCGCGCGGGCTGGTGTTCGGCGCCAAGTGGCGGGAGCTCTACAACGAGATCGTCTCGATGCGCGCTGCCTGCGGCG
ACGCGCATCTGAAGGTCATTCTGGGCACCGGCGACCTCGCCACTTTGCGCAACGTCATGCTGGCCTCGATGGTGGCGATG
ATGGCGGGCGCCGATTTCATCAAGACCTCGACCGGCAAGGAAAGCGTCAACGCGACGTTGCCCGTTGGCCTCGCCATGGT
GCGCGCCATCAGGGCCTATTTCGAGGAAACCGGTTATCTCATCGGCTTCAAGCCGGCCGGCGGCATATCCACGGCCAAGG
CCTCACTCGACTGGCTGGTGCTGATGAAGGAAGAGCTCGGCCGGCCATGGCTGGAACCGGAGCTATTCCGCTTCGGCGCG
TCGAGCCTTTTGACCGATATCGAACGGCAGCTCGAGCATCATCTGACCGGGCACTATTCGGCCAATCACCGCCACGCAAT
GGCTTGA

Upstream 100 bases:

>100_bases
CTCGCTTGAGGACTCGTGAAGCGTGGCTTCACGGGCTATCTTGTCGGGAAACGACGCGCACCAAGACATAAGCGCAAGTC
GCTGAATGAAAGGGCAGGAG

Downstream 100 bases:

>100_bases
GCACCCACCCCGATCGGCCTGGCCGATCGACCCTCCCCGCGAAGGGGAAGGGTGAAGGAGGCACCCCATGAATATTCTCG
ACCGCTATCACGCCATGGAA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MSSTIREADLGTKVTPLPARAAANTPVPLDHRIARNPGMKLDLGFMESVRSVNRSALERRVASLTKRRSIKADNQAAWLL
RAVACMDLTTLNSNDTEERVRRLCAKAINPFRRDIVEGLGIAGETIRPAAVCVYHPFVATAVDAVRGTGIHVAAVSTAFP
HGLAPLSTRLQEIEASVRDGADEIDVVIPRGLVFGAKWRELYNEIVSMRAACGDAHLKVILGTGDLATLRNVMLASMVAM
MAGADFIKTSTGKESVNATLPVGLAMVRAIRAYFEETGYLIGFKPAGGISTAKASLDWLVLMKEELGRPWLEPELFRFGA
SSLLTDIERQLEHHLTGHYSANHRHAMA

Sequences:

>Translated_348_residues
MSSTIREADLGTKVTPLPARAAANTPVPLDHRIARNPGMKLDLGFMESVRSVNRSALERRVASLTKRRSIKADNQAAWLL
RAVACMDLTTLNSNDTEERVRRLCAKAINPFRRDIVEGLGIAGETIRPAAVCVYHPFVATAVDAVRGTGIHVAAVSTAFP
HGLAPLSTRLQEIEASVRDGADEIDVVIPRGLVFGAKWRELYNEIVSMRAACGDAHLKVILGTGDLATLRNVMLASMVAM
MAGADFIKTSTGKESVNATLPVGLAMVRAIRAYFEETGYLIGFKPAGGISTAKASLDWLVLMKEELGRPWLEPELFRFGA
SSLLTDIERQLEHHLTGHYSANHRHAMA
>Mature_347_residues
SSTIREADLGTKVTPLPARAAANTPVPLDHRIARNPGMKLDLGFMESVRSVNRSALERRVASLTKRRSIKADNQAAWLLR
AVACMDLTTLNSNDTEERVRRLCAKAINPFRRDIVEGLGIAGETIRPAAVCVYHPFVATAVDAVRGTGIHVAAVSTAFPH
GLAPLSTRLQEIEASVRDGADEIDVVIPRGLVFGAKWRELYNEIVSMRAACGDAHLKVILGTGDLATLRNVMLASMVAMM
AGADFIKTSTGKESVNATLPVGLAMVRAIRAYFEETGYLIGFKPAGGISTAKASLDWLVLMKEELGRPWLEPELFRFGAS
SLLTDIERQLEHHLTGHYSANHRHAMA

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=317, Percent_Identity=55.5205047318612, Blast_Score=346, Evalue=2e-95,
Organism=Escherichia coli, GI1790841, Length=245, Percent_Identity=38.3673469387755, Blast_Score=134, Evalue=9e-33,
Organism=Caenorhabditis elegans, GI17533015, Length=296, Percent_Identity=40.5405405405405, Blast_Score=212, Evalue=3e-55,
Organism=Drosophila melanogaster, GI19922098, Length=290, Percent_Identity=48.2758620689655, Blast_Score=250, Evalue=8e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 37802; Mature: 37671

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTIREADLGTKVTPLPARAAANTPVPLDHRIARNPGMKLDLGFMESVRSVNRSALERR
CCCCCCHHCCCCCCCCCCCHHCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHH
VASLTKRRSIKADNQAAWLLRAVACMDLTTLNSNDTEERVRRLCAKAINPFRRDIVEGLG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCC
IAGETIRPAAVCVYHPFVATAVDAVRGTGIHVAAVSTAFPHGLAPLSTRLQEIEASVRDG
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHCC
ADEIDVVIPRGLVFGAKWRELYNEIVSMRAACGDAHLKVILGTGDLATLRNVMLASMVAM
CCCEEEEECCCCEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH
MAGADFIKTSTGKESVNATLPVGLAMVRAIRAYFEETGYLIGFKPAGGISTAKASLDWLV
HHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHE
LMKEELGRPWLEPELFRFGASSLLTDIERQLEHHLTGHYSANHRHAMA
EEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SSTIREADLGTKVTPLPARAAANTPVPLDHRIARNPGMKLDLGFMESVRSVNRSALERR
CCCCCHHCCCCCCCCCCCHHCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHH
VASLTKRRSIKADNQAAWLLRAVACMDLTTLNSNDTEERVRRLCAKAINPFRRDIVEGLG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCC
IAGETIRPAAVCVYHPFVATAVDAVRGTGIHVAAVSTAFPHGLAPLSTRLQEIEASVRDG
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHCC
ADEIDVVIPRGLVFGAKWRELYNEIVSMRAACGDAHLKVILGTGDLATLRNVMLASMVAM
CCCEEEEECCCCEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH
MAGADFIKTSTGKESVNATLPVGLAMVRAIRAYFEETGYLIGFKPAGGISTAKASLDWLV
HHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHE
LMKEELGRPWLEPELFRFGASSLLTDIERQLEHHLTGHYSANHRHAMA
EEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA