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The map label for this gene is ycaD [C]

Identifier: 13473417

GI number: 13473417

Start: 3203881

End: 3205179

Strand: Reverse

Name: ycaD [C]

Synonym: mll4007

Alternate gene names: 13473417

Gene position: 3205179-3203881 (Counterclockwise)

Preceding gene: 13473418

Following gene: 13473415

Centisome position: 45.55

GC content: 67.51

Gene sequence:

>1299_bases
ATGGCAACTCAAACCAAGACCCAACCCGCAGTCGAGCCAGAGCATGGCAGCGCGCCGACGCCGCTGATCGCGATCGCCAG
TGTCATCGTGTCGATGGCGCTGATCGCCATCGGCAATGGGCTGATGTTTGCCTACATCCCGGTCCGGCTCGGCGTCGAGG
GCTTCGATCCGACCTGGGCCGGGCTGATCGTCACCGGCCTGTCGGCCGGCGGTCTTGCCGGCTGCATCCTGACCGGGCCG
CTGGTGCGCAGGGTTGGCCATGCCCGCGCCTTCATGGTGCTGTCGGCGCTGATCGCGCTCTCCAACGCGGCCATCGGCGC
CGGTCCGCACCCCGTGCTGTGGATCGGCGCGCGCGCCCTCTACGGCTTTGCCATATGCGGCCTGTTCATTGTCGCGCAGA
GCTGGCTGAACGATGCCGTGGCCAACGCCATACGCGGCCGGGTGATGGCTTTCTTCTACGTCGCCTATGTCGCCGGGCTC
GGCGTTGGTTATGCGACGCTGGCGCTGGTCGACATCAAAACCGCGGACGCGCCGCTGATCGGCATCGTTTTCACCGCCTT
GTCGATCCTTCCCGTCGGCATGACACGGCTGGCGCAGCCGCCGGCGCCGCAGGCGGCCTCGGTGGCGCTGCGCCGGGCCT
GGCGGATTTCGCCGGTGGGCGTTGCCGGCATGCTGGCGGTCGGCGGCCTGTCCATGTCGATTTCCGGTTTCGCGCCAATC
CATGCCACGGCCAAGGGCTATAGCCAGGCCGATGTGGCACTGCTGCTTTCGGTGATGCCGCTCGGCACGCTGATCCTGCA
GCTTCCCTTCGGCTGGATTTCCGACCGCACCGATCGCCGCTACGTGCTGATCGGGGCATCCGCGCTTGCCGCGGCCGCCG
GCATGCTCGCGCTCGGTTTCGACGGCGGCGCGCTGCCGGCGCTGCTGGTGATCTATGTCTTATGGGACGGCGCCTCGGAA
TCGATCTATTCGCTGTCCAGCGCGCATGCCGCCGACCGTGCCGGCAAGGACGACATGGTGGCGTTGTCCAGCTCGCTCCT
GTTCGCCTGGTCTCTGGCCGGCTTTGTGGTGCCGGGCATCGTGACGGCCCTGTCGGCCATTTTCGGCACGCAGGCCTTCA
TCTATGTGGCTGTCGTCATCGCCTGCGCCTTCTGCCTGTTCGTGCTGTTGCGCGTCTTCACCACGCAGGCCGTGCCCGCC
ACCGAGACCGGCAGCTTCGCACCGATGACGGCGCAGGCGCCGCTGCCGGTGGAACTCGCCTATGCGCCGGAAGAGATCGC
AGGCCGGACCAAGGATTGA

Upstream 100 bases:

>100_bases
GGTGACGCCTCTCCGCAACGCGAGGGCGAGCGTTTAGGCCGCCCGGCCATGTCGTTTTTACAGCGGCGCGTGCCTGATGG
ATCGGCGATGCTGACCGGAT

Downstream 100 bases:

>100_bases
AGGCTGTTTTTCTTCGCAAGGCCGTAGGGAAACCGCTCCGGGCGCCCCGCCATCGCCTACTGCTTGCGGGCCTCCGGCGC
CGGCGCTTCCGGCGGCGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MATQTKTQPAVEPEHGSAPTPLIAIASVIVSMALIAIGNGLMFAYIPVRLGVEGFDPTWAGLIVTGLSAGGLAGCILTGP
LVRRVGHARAFMVLSALIALSNAAIGAGPHPVLWIGARALYGFAICGLFIVAQSWLNDAVANAIRGRVMAFFYVAYVAGL
GVGYATLALVDIKTADAPLIGIVFTALSILPVGMTRLAQPPAPQAASVALRRAWRISPVGVAGMLAVGGLSMSISGFAPI
HATAKGYSQADVALLLSVMPLGTLILQLPFGWISDRTDRRYVLIGASALAAAAGMLALGFDGGALPALLVIYVLWDGASE
SIYSLSSAHAADRAGKDDMVALSSSLLFAWSLAGFVVPGIVTALSAIFGTQAFIYVAVVIACAFCLFVLLRVFTTQAVPA
TETGSFAPMTAQAPLPVELAYAPEEIAGRTKD

Sequences:

>Translated_432_residues
MATQTKTQPAVEPEHGSAPTPLIAIASVIVSMALIAIGNGLMFAYIPVRLGVEGFDPTWAGLIVTGLSAGGLAGCILTGP
LVRRVGHARAFMVLSALIALSNAAIGAGPHPVLWIGARALYGFAICGLFIVAQSWLNDAVANAIRGRVMAFFYVAYVAGL
GVGYATLALVDIKTADAPLIGIVFTALSILPVGMTRLAQPPAPQAASVALRRAWRISPVGVAGMLAVGGLSMSISGFAPI
HATAKGYSQADVALLLSVMPLGTLILQLPFGWISDRTDRRYVLIGASALAAAAGMLALGFDGGALPALLVIYVLWDGASE
SIYSLSSAHAADRAGKDDMVALSSSLLFAWSLAGFVVPGIVTALSAIFGTQAFIYVAVVIACAFCLFVLLRVFTTQAVPA
TETGSFAPMTAQAPLPVELAYAPEEIAGRTKD
>Mature_431_residues
ATQTKTQPAVEPEHGSAPTPLIAIASVIVSMALIAIGNGLMFAYIPVRLGVEGFDPTWAGLIVTGLSAGGLAGCILTGPL
VRRVGHARAFMVLSALIALSNAAIGAGPHPVLWIGARALYGFAICGLFIVAQSWLNDAVANAIRGRVMAFFYVAYVAGLG
VGYATLALVDIKTADAPLIGIVFTALSILPVGMTRLAQPPAPQAASVALRRAWRISPVGVAGMLAVGGLSMSISGFAPIH
ATAKGYSQADVALLLSVMPLGTLILQLPFGWISDRTDRRYVLIGASALAAAAGMLALGFDGGALPALLVIYVLWDGASES
IYSLSSAHAADRAGKDDMVALSSSLLFAWSLAGFVVPGIVTALSAIFGTQAFIYVAVVIACAFCLFVLLRVFTTQAVPAT
ETGSFAPMTAQAPLPVELAYAPEEIAGRTKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=348, Percent_Identity=22.4137931034483, Blast_Score=82, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 44424; Mature: 44293

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATQTKTQPAVEPEHGSAPTPLIAIASVIVSMALIAIGNGLMFAYIPVRLGVEGFDPTWA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCHHH
GLIVTGLSAGGLAGCILTGPLVRRVGHARAFMVLSALIALSNAAIGAGPHPVLWIGARAL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHH
YGFAICGLFIVAQSWLNDAVANAIRGRVMAFFYVAYVAGLGVGYATLALVDIKTADAPLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEEECCCCCCHH
GIVFTALSILPVGMTRLAQPPAPQAASVALRRAWRISPVGVAGMLAVGGLSMSISGFAPI
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEECCCCCC
HATAKGYSQADVALLLSVMPLGTLILQLPFGWISDRTDRRYVLIGASALAAAAGMLALGF
CHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEHHHHHHHHHHHEECC
DGGALPALLVIYVLWDGASESIYSLSSAHAADRAGKDDMVALSSSLLFAWSLAGFVVPGI
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VTALSAIFGTQAFIYVAVVIACAFCLFVLLRVFTTQAVPATETGSFAPMTAQAPLPVELA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
YAPEEIAGRTKD
ECCHHHCCCCCC
>Mature Secondary Structure 
ATQTKTQPAVEPEHGSAPTPLIAIASVIVSMALIAIGNGLMFAYIPVRLGVEGFDPTWA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCHHH
GLIVTGLSAGGLAGCILTGPLVRRVGHARAFMVLSALIALSNAAIGAGPHPVLWIGARAL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHH
YGFAICGLFIVAQSWLNDAVANAIRGRVMAFFYVAYVAGLGVGYATLALVDIKTADAPLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEEECCCCCCHH
GIVFTALSILPVGMTRLAQPPAPQAASVALRRAWRISPVGVAGMLAVGGLSMSISGFAPI
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEECCCCCC
HATAKGYSQADVALLLSVMPLGTLILQLPFGWISDRTDRRYVLIGASALAAAAGMLALGF
CHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEHHHHHHHHHHHEECC
DGGALPALLVIYVLWDGASESIYSLSSAHAADRAGKDDMVALSSSLLFAWSLAGFVVPGI
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VTALSAIFGTQAFIYVAVVIACAFCLFVLLRVFTTQAVPATETGSFAPMTAQAPLPVELA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
YAPEEIAGRTKD
ECCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]